Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KP952_RS11230 Genome accession   NZ_CP076731
Coordinates   2129381..2130001 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2124381..2135001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS11190 (KP952_11190) ptsA 2125513..2126019 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  KP952_RS11195 (KP952_11195) ypqA 2126157..2126576 (+) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  KP952_RS11200 (KP952_11200) sppG 2126597..2126974 (-) 378 WP_041053169.1 YppG family protein -
  KP952_RS11205 (KP952_11205) yppF 2127161..2127349 (+) 189 WP_003230690.1 YppF family protein -
  KP952_RS11210 (KP952_11210) yppE 2127388..2127759 (-) 372 WP_003246080.1 YppE family protein -
  KP952_RS11215 (KP952_11215) yppD 2127805..2128050 (-) 246 WP_004398488.1 YppD family protein -
  KP952_RS11220 (KP952_11220) sspM 2128249..2128353 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KP952_RS11225 (KP952_11225) yppC 2128378..2129340 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  KP952_RS11230 (KP952_11230) recU 2129381..2130001 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  KP952_RS11235 (KP952_11235) ponA 2130023..2132767 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  KP952_RS11240 (KP952_11240) ypoC 2132843..2133337 (-) 495 WP_009967579.1 YpoC family protein -
  KP952_RS11245 (KP952_11245) nth 2133334..2133993 (-) 660 WP_009967580.1 endonuclease III -
  KP952_RS11250 (KP952_11250) dnaD 2134012..2134710 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=577757 KP952_RS11230 WP_014480105.1 2129381..2130001(+) (recU) [Bacillus subtilis subsp. subtilis strain Miz-8]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=577757 KP952_RS11230 WP_014480105.1 2129381..2130001(+) (recU) [Bacillus subtilis subsp. subtilis strain Miz-8]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995