Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KP952_RS05765 Genome accession   NZ_CP076731
Coordinates   1117384..1117962 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112384..1122962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS22220 - 1112904..1113419 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  KP952_RS22225 - 1113708..1114286 (-) 579 Protein_1075 protoglobin domain-containing protein -
  KP952_RS05750 (KP952_05750) comW 1114341..1115869 (-) 1529 Protein_1076 FAD-dependent oxidoreductase -
  KP952_RS05755 (KP952_05755) yhxC 1115973..1116830 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  KP952_RS05760 (KP952_05760) yhzC 1116858..1117091 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  KP952_RS05765 (KP952_05765) comK 1117384..1117962 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  KP952_RS05770 (KP952_05770) yhxD 1118007..1118906 (-) 900 WP_069837408.1 SDR family oxidoreductase -
  KP952_RS05775 (KP952_05775) yhjA 1119123..1119392 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  KP952_RS05780 (KP952_05780) yhjB 1119436..1120905 (-) 1470 WP_014479374.1 sodium:solute symporter family protein -
  KP952_RS05785 (KP952_05785) yhjC 1120902..1121102 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  KP952_RS05790 (KP952_05790) - 1121301..1121672 (-) 372 WP_014476361.1 hypothetical protein -
  KP952_RS05795 (KP952_05795) yhjE 1121824..1122447 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  KP952_RS05800 (KP952_05800) lepB 1122449..1122955 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=577738 KP952_RS05765 WP_003245329.1 1117384..1117962(+) (comK) [Bacillus subtilis subsp. subtilis strain Miz-8]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=577738 KP952_RS05765 WP_003245329.1 1117384..1117962(+) (comK) [Bacillus subtilis subsp. subtilis strain Miz-8]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1