NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	MQC90_RS15055	Genome accession	NZ_CP094361
Coordinates	2831383..2831988 (-)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis strain NCIB 3610
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2826383..2836988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MQC90_RS15025	-	2827196..2827585 (+)	390	WP_004398667.1	TIGR04086 family membrane protein	-
MQC90_RS15030	yajC	2827642..2827908 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
MQC90_RS15035	tgt	2827945..2829090 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
MQC90_RS15040	queA	2829117..2830145 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
MQC90_RS15045	yrzS	2830175..2830375 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
MQC90_RS15050	ruvB	2830368..2831372 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
MQC90_RS15055	ruvA	2831383..2831988 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
MQC90_RS15060	bofC	2832127..2832639 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
MQC90_RS15065	csbX	2832687..2833994 (-)	1308	WP_003246197.1	MFS transporter	-
MQC90_RS15070	iolG	2834065..2835090 (-)	1026	WP_004398990.1	inositol 2-dehydrogenase	-
MQC90_RS15075	yrzF	2835328..2835975 (+)	648	WP_003246159.1	phosphotransferase	-
MQC90_RS15080	-	2836021..2836143 (-)	123	WP_003229707.1	hypothetical protein	-
MQC90_RS15085	yrzH	2836228..2836518 (+)	291	WP_003246047.1	DUF5412 family protein	-
MQC90_RS15090	-	2836525..2836665 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=577694 MQC90_RS15055 WP_003229717.1 2831383..2831988(-) (ruvA) [Bacillus subtilis strain NCIB 3610]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=577694 MQC90_RS15055 WP_003229717.1 2831383..2831988(-) (ruvA) [Bacillus subtilis strain NCIB 3610]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0577694