Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CCX78_RS06335 Genome accession   NZ_AP017931
Coordinates   1233200..1234903 (-) Length   567 a.a.
NCBI ID   WP_096585213.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1228200..1239903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS06310 (LASAK_01260) coaBC 1230219..1231436 (-) 1218 WP_016264860.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CCX78_RS06315 (LASAK_01261) rpoZ 1231525..1231782 (-) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  CCX78_RS06320 (LASAK_01262) gmk 1231787..1232398 (-) 612 WP_011374394.1 guanylate kinase -
  CCX78_RS06325 (LASAK_01263) - 1232471..1232695 (-) 225 WP_016264859.1 YdbC family protein -
  CCX78_RS06330 (LASAK_01264) - 1232818..1233141 (+) 324 WP_096585210.1 hypothetical protein -
  CCX78_RS06335 (LASAK_01265) recN 1233200..1234903 (-) 1704 WP_096585213.1 DNA repair protein RecN Machinery gene
  CCX78_RS06340 (LASAK_01266) argR 1234953..1235405 (-) 453 WP_025015872.1 arginine repressor -
  CCX78_RS06345 (LASAK_01267) - 1235485..1236315 (-) 831 WP_056948327.1 TlyA family RNA methyltransferase -
  CCX78_RS06350 (LASAK_01268) - 1236324..1237196 (-) 873 WP_096585217.1 polyprenyl synthetase family protein -
  CCX78_RS06355 (LASAK_01269) - 1237196..1237408 (-) 213 Protein_1245 exodeoxyribonuclease VII small subunit -
  CCX78_RS06360 (LASAK_01270) xseA 1237427..1238776 (-) 1350 WP_056948323.1 exodeoxyribonuclease VII large subunit -
  CCX78_RS06365 (LASAK_01271) folD 1238769..1239620 (-) 852 WP_056948321.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63149.15 Da        Isoelectric Point: 4.7631

>NTDB_id=57769 CCX78_RS06335 WP_096585213.1 1233200..1234903(-) (recN) [Latilactobacillus sakei strain LK-145]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTLPENGTTAALL
AEYGIEHDNQTILLQRDLALNGHNVCRVNGHLVNTTTLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTTLASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILAYGAQITKELQAMQATGANASELEQQFEQQQAQLLEEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
TVDNQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=57769 CCX78_RS06335 WP_096585213.1 1233200..1234903(-) (recN) [Latilactobacillus sakei strain LK-145]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACAGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTGCTCGCTGGTGGTAGGGGGTCACAGGATT
TCATCCGAACCGGTGCGAAAAAAGCGACATTAGAGGGCTTGTTTACATTACCCGAAAACGGCACGACAGCCGCGCTTTTA
GCTGAATATGGGATTGAACATGATAATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
CGTTAATGGGCATCTGGTCAATACCACGACGCTTAAAAAGATTGGAGAAACATTAGTTGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAACTTTGGCGAGTGCTAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCATTGAAGAAGAAGCAACAAAATGAGCAGGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCAGCGCAATTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGAATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAA
GAAGGCAACGCGCTAGATCAAATCGCGATTGCAATGAATCAAATGCAAGAAATTGCGGAATTAGATCCTGAATTCAAAAG
AATTGCCGATAATCTACAAACAGGCTATTACACACTGCAAGATAGCGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAAGCGCGCTTGGATGAAATTGAACAGCGCTTGGAAACAATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATCTTAGCTTATGGGGCGCAAATTACCAAAGAATTGCAAGCGATGCAGGCCACCGGAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGGAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCAGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCGCTCTACATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ACGGTTGATAATCAGCAATTTATGCGCAGCGGTCGGGATAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCGCTTGCCAAGACTGCTTCTGGTGGGGAATTATCCCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTTGATGAAGTTGATACCGGGGTCAGTGGGCGTGTTGCACAGGCAATCGCCAATAAAATT
AGCGAAATTGCCCAACACTCACAAGTCCTCTGTATTACGCACTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAGCAAAACCGCACAGAAACATCAATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.645

100

0.462

Multiple sequence alignment