Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   MQC90_RS09255 Genome accession   NZ_CP094361
Coordinates   1773973..1774404 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain NCIB 3610     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1768973..1779404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS09235 spoVS 1769534..1769794 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  MQC90_RS09240 tdh 1770060..1771103 (+) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  MQC90_RS09245 kbl 1771116..1772294 (+) 1179 WP_003231837.1 glycine C-acetyltransferase -
  MQC90_RS09250 miaB 1772442..1773971 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  MQC90_RS09255 ymcA 1773973..1774404 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  MQC90_RS09260 cotE 1774666..1775211 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  MQC90_RS09265 mutS 1775344..1777915 (+) 2572 Protein_1767 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=577659 MQC90_RS09255 WP_003231834.1 1773973..1774404(+) (ymcA) [Bacillus subtilis strain NCIB 3610]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=577659 MQC90_RS09255 WP_003231834.1 1773973..1774404(+) (ymcA) [Bacillus subtilis strain NCIB 3610]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1