Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KQ224_RS10785 Genome accession   NZ_CP076721
Coordinates   2090853..2092655 (+) Length   600 a.a.
NCBI ID   WP_171988748.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2085853..2097655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS10765 (KQ224_10765) - 2086000..2086743 (+) 744 WP_216806630.1 hypothetical protein -
  KQ224_RS10770 (KQ224_10770) - 2087015..2087608 (-) 594 WP_174845708.1 DUF1361 domain-containing protein -
  KQ224_RS10775 (KQ224_10775) metG 2087764..2089767 (+) 2004 WP_216806631.1 methionine--tRNA ligase -
  KQ224_RS10780 (KQ224_10780) coiA 2089842..2090780 (+) 939 WP_216806632.1 competence protein CoiA Machinery gene
  KQ224_RS10785 (KQ224_10785) pepF 2090853..2092655 (+) 1803 WP_171988748.1 oligoendopeptidase F Regulator
  KQ224_RS10790 (KQ224_10790) - 2092657..2093103 (+) 447 WP_216806633.1 hypothetical protein -
  KQ224_RS10795 (KQ224_10795) - 2093116..2093664 (+) 549 WP_216806634.1 DUF6630 family protein -
  KQ224_RS10800 (KQ224_10800) - 2093739..2094458 (+) 720 WP_216806635.1 O-methyltransferase -
  KQ224_RS10805 (KQ224_10805) prsA 2094521..2095507 (+) 987 WP_216806636.1 peptidylprolyl isomerase PrsA -
  KQ224_RS10810 (KQ224_10810) - 2095775..2096263 (+) 489 WP_216806637.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69230.37 Da        Isoelectric Point: 4.5292

>NTDB_id=577611 KQ224_RS10785 WP_171988748.1 2090853..2092655(+) (pepF) [Streptococcus parasuis strain H35]
MSKQRHEIEGKYQWDLTTIFPTDEAWEEELASLQAETETAKDFAGHLLDSAKSLLDISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSAFSQAFAFYEPEFMAITEEQLKAFMDEEPTLLQYSHQFEKLLATKDHVLSQEIEEVLAAT
SEIFESPAETFSVLDNASILFPEIADEEGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAYENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEELVEKGLHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=577611 KQ224_RS10785 WP_171988748.1 2090853..2092655(+) (pepF) [Streptococcus parasuis strain H35]
ATGTCTAAACAACGTCATGAAATTGAAGGAAAATACCAGTGGGATTTGACCACTATTTTTCCAACCGATGAAGCTTGGGA
AGAAGAATTAGCTTCATTACAAGCAGAAACAGAAACGGCAAAGGATTTTGCTGGCCACTTGCTTGATTCGGCTAAAAGTC
TCTTAGATATTAGTGAAACACAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAT
CAAGATACTCGTGAAGGTAAATACCAGGAATTTCAGGCTAAAGCCATGGGCTTGTATTCGGCCTTTTCACAGGCTTTTGC
CTTCTATGAACCTGAATTTATGGCTATTACTGAGGAACAGTTGAAAGCATTCATGGATGAAGAGCCAACTTTGTTGCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAACTAAGGACCATGTTTTGTCACAAGAAATTGAAGAAGTATTGGCTGCTACG
AGTGAGATTTTCGAATCTCCAGCTGAAACTTTCTCTGTTTTGGATAATGCAAGTATCCTATTCCCTGAAATTGCGGATGA
AGAGGGACATTTGGTACCACTTTCTCACGGTAACTACATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGTCAAGAAG
CATATGAGGCTATGTACGGAACCTATGAGCAGTTTCAGCATACCTACGCTAAGACTCTGCAGTCAAACGTTAAGGTCAAT
AACCTGAAAGCACGTTTGCGGAAGTACGACTCAGCCCGTCACGCATCTCTTGCAGCCAATTTTATTCCAGAATCTGTTTA
TGATACATTAGTTGAGGCAGTCAACAAGCACCTCCCGCTCTTGCACCGTTATATCAATTTGCGAAAGAAACTCTTGGGTA
TTGATGACTTGAAGATGTACGATATGTACACGCCATTGTCAGATTTTAGCACCAAGATTTCCTATGAAGATGCACTCAAA
AAATGCCAAGAAACCTTGGAAATCTTCGGTGAGGATTATTCGGCTATTGTAAAGGAAGCCTATGAGAATCGTTGGATTGA
CGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATATTCAGGTGGTGCCTACGACACAAACGCCTTCATGCTTCTCAACT
GGCAAGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGCAAGACA
CAACCCTATGTCTACGGCCATTATTCACTTTTCTTAGCTGAAATTGCGTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTATTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTCAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAAGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTATACGGTCAGACTAACGAAAAATACTACGGACTTTCTGCAGAAGAAAACCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTCGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AACGTCATTGCAAAAGCTGGTGTAGATATGACCAAGGAAGACTATCTTAACGATGCTTTCAAAGTTTTTGAAGCACGCCT
AACTGAATTGGAAGAGCTTGTTGAAAAAGGGTTACATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697