Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MQC90_RS03890 Genome accession   NZ_CP094361
Coordinates   750555..751685 (+) Length   376 a.a.
NCBI ID   WP_003243267.1    Uniprot ID   Q59HN8
Organism   Bacillus subtilis strain NCIB 3610     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 745555..756685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS03865 - 745857..746162 (-) 306 WP_003242885.1 hypothetical protein -
  MQC90_RS03870 yezA 746229..746435 (-) 207 WP_003233877.1 bacteriocin immunity protein -
  MQC90_RS03875 yezG 746675..747130 (-) 456 WP_010886434.1 TIGR01741 family protein -
  MQC90_RS03880 yeeF 747150..749159 (-) 2010 WP_003242909.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  MQC90_RS03885 - 749371..750393 (+) 1023 WP_003243884.1 hypothetical protein -
  MQC90_RS03890 rapC 750555..751685 (+) 1131 WP_003243267.1 response regulator aspartate phosphatase RapH Regulator
  MQC90_RS03895 phrH 751675..751848 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  MQC90_RS03900 yeeI 752008..752727 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  MQC90_RS03905 yeeK 752861..753298 (+) 438 WP_003244206.1 spore coat protein YeeK -
  MQC90_RS03910 yezE 753413..753997 (+) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  MQC90_RS03915 yesE 754076..754519 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  MQC90_RS03920 yesF 754516..755376 (+) 861 WP_003243852.1 NAD-dependent epimerase/dehydratase family protein -
  MQC90_RS03925 cotJA 755503..755751 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  MQC90_RS03930 cotJB 755735..755998 (+) 264 WP_003219491.1 spore coat protein CotJB -
  MQC90_RS03935 cotJC 756013..756582 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44003.32 Da        Isoelectric Point: 5.7372

>NTDB_id=577611 MQC90_RS03890 WP_003243267.1 750555..751685(+) (rapC) [Bacillus subtilis strain NCIB 3610]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=577611 MQC90_RS03890 WP_003243267.1 750555..751685(+) (rapC) [Bacillus subtilis strain NCIB 3610]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATCGAGACCCCTCAGAAAAAACTCACAGGTCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCGGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGTAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3Q15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402