Detailed information NTG0577608

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: KQ224_RS09640
• Genome accession: NZ_CP076721
• Coordinates: 1863855..1864790 (+)
• Length: 311 a.a.
• NCBI ID: WP_216806515.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain H35
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1858855..1869790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ224_RS09620 (KQ224_09620)	-	1859127..1860773 (+)	1647	WP_174845523.1	peptide ABC transporter substrate-binding protein	-
KQ224_RS09625 (KQ224_09625)	-	1860844..1861758 (+)	915	WP_171989135.1	ABC transporter permease	-
KQ224_RS09630 (KQ224_09630)	-	1861769..1862800 (+)	1032	WP_174845522.1	ABC transporter permease	-
KQ224_RS09635 (KQ224_09635)	oppD	1862815..1863858 (+)	1044	WP_171989134.1	ABC transporter ATP-binding protein	Regulator
KQ224_RS09640 (KQ224_09640)	amiF	1863855..1864790 (+)	936	WP_216806515.1	ABC transporter ATP-binding protein	Regulator
KQ224_RS09645 (KQ224_09645)	-	1864846..1865214 (-)	369	WP_253952818.1	DUF3397 domain-containing protein	-
KQ224_RS09650 (KQ224_09650)	rplK	1865369..1865794 (+)	426	WP_024382554.1	50S ribosomal protein L11	-
KQ224_RS09655 (KQ224_09655)	rplA	1865835..1866524 (+)	690	WP_216806516.1	50S ribosomal protein L1	-
KQ224_RS09660 (KQ224_09660)	-	1866630..1866920 (+)	291	WP_171989863.1	hypothetical protein	-
KQ224_RS09665 (KQ224_09665)	yghU	1866929..1867717 (+)	789	WP_216806517.1	glutathione-dependent disulfide-bond oxidoreductase	-
KQ224_RS09670 (KQ224_09670)	-	1867877..1869517 (+)	1641	WP_216807335.1	polysaccharide biosynthesis protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35068.81 Da
• Isoelectric Point: 5.8231

>NTDB_id=577608 KQ224_RS09640 WP_216806515.1 1863855..1864790(+) (amiF) [Streptococcus parasuis strain H35]
MSENRKKLVELKNVSLTFNAGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKL
SGKDLKEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTPSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSDA
VYNDPLHPYTKSLLSAIPEPDPEFEKDRVHMEYDPSAELDGQERQMHEITPGHFVLATEEEAAAYRAERNK

Nucleotide

• Length: 936 bp

>NTDB_id=577608 KQ224_RS09640 WP_216806515.1 1863855..1864790(+) (amiF) [Streptococcus parasuis strain H35]
ATGAGCGAAAATAGAAAAAAACTCGTTGAACTAAAAAATGTTTCATTGACTTTTAATGCAGGTAAGAAAAACGAAGTTAA
AGCCATTGACAATGTTTCCTTTGACATTTATGAAGGAGAGGTCTTTGGTCTCGTTGGTGAATCTGGGTCAGGAAAGACAA
CGGTTGGCCGTACCATTTTAAAGTTGTATGACTATAATGCTGGTGATATTCTCTTTGATGGCCAGTCTATTTCAAAGCTT
TCTGGAAAAGATTTGAAAGAATTTCGAAAAGATGCACAAATGATTTTCCAAGATCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCAGAAGGTTTGGACATTCACGGTTTGACTCCTTCAAAAGAAGAACGGGATGAGCGTGTTC
AACATTTATTGGATTTAGTCGGTTTAAATAAGGATCATTTAACGCGTTATCCGCATGAGTTCTCAGGTGGACAACGACAA
CGGATTGGTATTGCACGTGCCTTAGCAGTTCGTCCAAAATTCATTATCGCTGACGAACCAATCTCAGCTTTAGATGTATC
CATTCAAGCACAAGTTGTTAATTTGATGCAAAAATTGCAGAGAGAACAAGGTCTAACCTACCTCTTTGTTGCACACGATT
TGTCAATGGTTAAGTACATCTCTGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTGGAAATTGGAACGTCGGATGCT
GTTTACAATGATCCACTTCATCCGTACACGAAGAGTTTGCTTTCTGCTATCCCTGAACCGGATCCAGAATTTGAAAAAGA
TCGTGTCCATATGGAATACGATCCAAGTGCTGAATTAGATGGTCAAGAACGTCAGATGCATGAGATTACGCCTGGTCACT
TTGTATTGGCTACAGAAGAAGAGGCTGCGGCATACCGCGCTGAACGAAACAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	52.597	99.035	0.521
amiF	Streptococcus thermophilus LMG 18311	52.273	99.035	0.518
amiF	Streptococcus salivarius strain HSISS4	51.948	99.035	0.514