Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   MQC90_RS02425 Genome accession   NZ_CP094361
Coordinates   475655..476089 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain NCIB 3610     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470655..481089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS02395 ydaD 471305..472165 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  MQC90_RS02400 lyxE 472181..472684 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  MQC90_RS02405 ydaF 472770..473321 (+) 552 WP_003246691.1 GNAT family protein -
  MQC90_RS02410 ydaG 473399..473821 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  MQC90_RS02415 amj 474327..475136 (+) 810 WP_003234394.1 lipid II flippase Amj -
  MQC90_RS02420 ydzA 475180..475470 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  MQC90_RS02425 lrpC 475655..476089 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  MQC90_RS02430 topB 476154..478337 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  MQC90_RS02435 epsJ 478540..479628 (+) 1089 WP_003246551.1 lipoprotein -
  MQC90_RS02440 epsK 479609..480460 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=577602 MQC90_RS02425 WP_003246585.1 475655..476089(+) (lrpC) [Bacillus subtilis strain NCIB 3610]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=577602 MQC90_RS02425 WP_003246585.1 475655..476089(+) (lrpC) [Bacillus subtilis strain NCIB 3610]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1