Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   KQ224_RS08100 Genome accession   NZ_CP076721
Coordinates   1562188..1562901 (+) Length   237 a.a.
NCBI ID   WP_216806378.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557188..1567901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS08085 (KQ224_08085) - 1557913..1558206 (-) 294 WP_216806376.1 iron chaperone -
  KQ224_RS08090 (KQ224_08090) treC 1558257..1559879 (-) 1623 WP_216806377.1 alpha,alpha-phosphotrehalase -
  KQ224_RS08095 (KQ224_08095) treP 1559958..1561957 (-) 2000 Protein_1567 PTS system trehalose-specific EIIBC component -
  KQ224_RS08100 (KQ224_08100) treR 1562188..1562901 (+) 714 WP_216806378.1 trehalose operon repressor Regulator
  KQ224_RS08105 (KQ224_08105) - 1562959..1563276 (+) 318 WP_130554395.1 hypothetical protein -
  KQ224_RS08110 (KQ224_08110) - 1563273..1563821 (+) 549 WP_171989542.1 CvpA family protein -
  KQ224_RS08115 (KQ224_08115) - 1564159..1566492 (+) 2334 WP_171989543.1 endonuclease MutS2 -
  KQ224_RS08120 (KQ224_08120) trxA 1566753..1567067 (+) 315 WP_171989544.1 thioredoxin -
  KQ224_RS11550 - 1567484..1567897 (+) 414 Protein_1573 acetate--CoA ligase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27612.57 Da        Isoelectric Point: 5.9178

>NTDB_id=577601 KQ224_RS08100 WP_216806378.1 1562188..1562901(+) (treR) [Streptococcus parasuis strain H35]
MKKYQEIYNDLKEKIRTNVYPAETSLPTEQQLQEMYQVSRDTVRKALAILTERGMIQKVQGRGSLVLKQELLNFPISGLT
SYQELTDALQLQSDTAVVDLELITVNSNLSQLTGFEPFSKVWKIVRTRYIDGTVSVVDTDYLSSDIVPKMDKEIAKGSIY
QYLEKELKLDISYAQKEITVEPTSWEERELMKTQDDYLVLIKSRVFLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=577601 KQ224_RS08100 WP_216806378.1 1562188..1562901(+) (treR) [Streptococcus parasuis strain H35]
ATGAAAAAATATCAAGAAATATATAATGATTTAAAAGAGAAAATACGAACAAATGTCTATCCTGCTGAGACTTCTTTACC
AACTGAACAACAATTGCAAGAAATGTATCAAGTTAGCCGAGATACTGTTCGAAAAGCACTGGCTATTCTGACAGAACGCG
GAATGATTCAAAAAGTTCAAGGAAGAGGTTCTCTAGTTTTAAAACAGGAACTATTGAATTTTCCTATTTCTGGCTTAACT
TCGTATCAAGAATTGACGGATGCTTTGCAGTTGCAGTCAGATACAGCGGTTGTTGATTTGGAGCTCATTACAGTAAATAG
TAATTTATCTCAATTAACAGGATTTGAACCATTTAGTAAGGTATGGAAAATTGTACGTACAAGGTACATAGATGGAACGG
TTTCAGTAGTTGATACGGATTATCTCTCTTCAGATATTGTTCCGAAGATGGATAAAGAAATTGCAAAAGGTTCAATCTAT
CAATATTTAGAAAAAGAACTAAAATTGGATATATCCTATGCTCAGAAAGAAATTACGGTTGAACCAACCAGTTGGGAAGA
ACGTGAATTGATGAAGACTCAAGATGATTACTTGGTATTGATAAAATCAAGAGTTTTTCTAGGCGATACACAACAATTTC
AATATACTGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTGGATTTTGCTCGTAGAAAGCATTCACTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.855

98.734

0.502