Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KQ224_RS05980 Genome accession   NZ_CP076721
Coordinates   1162011..1163378 (-) Length   455 a.a.
NCBI ID   WP_130554220.1    Uniprot ID   A0A4Q8L3V7
Organism   Streptococcus parasuis strain H35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1143113..1164387 1162011..1163378 within 0


Gene organization within MGE regions


Location: 1143113..1164387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS05845 (KQ224_05845) rsmA 1143113..1143988 (-) 876 WP_216806191.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  KQ224_RS05850 (KQ224_05850) - 1144027..1144279 (-) 253 Protein_1151 8-oxo-dGTP diphosphatase -
  KQ224_RS05855 (KQ224_05855) - 1144286..1144456 (-) 171 WP_253952786.1 hypothetical protein -
  KQ224_RS11650 - 1144552..1144680 (-) 129 WP_275577031.1 hypothetical protein -
  KQ224_RS05865 (KQ224_05865) rnmV 1144673..1145239 (-) 567 WP_216806192.1 ribonuclease M5 -
  KQ224_RS05870 (KQ224_05870) - 1145223..1146005 (-) 783 WP_171988962.1 TatD family hydrolase -
  KQ224_RS05875 (KQ224_05875) - 1146155..1147036 (+) 882 WP_216806193.1 diacylglycerol kinase family protein -
  KQ224_RS05880 (KQ224_05880) rpmH 1147086..1147223 (-) 138 WP_049618373.1 50S ribosomal protein L34 -
  KQ224_RS05885 (KQ224_05885) jag 1147445..1148449 (-) 1005 WP_171988964.1 RNA-binding cell elongation regulator Jag/EloR -
  KQ224_RS05890 (KQ224_05890) - 1148468..1149280 (-) 813 WP_171988965.1 YidC/Oxa1 family membrane protein insertase -
  KQ224_RS05895 (KQ224_05895) rnpA 1149264..1149623 (-) 360 WP_171988966.1 ribonuclease P protein component -
  KQ224_RS05900 (KQ224_05900) argH 1149694..1151088 (-) 1395 WP_216806194.1 argininosuccinate lyase -
  KQ224_RS05905 (KQ224_05905) - 1151102..1152295 (-) 1194 WP_171988968.1 argininosuccinate synthase -
  KQ224_RS05910 (KQ224_05910) - 1152487..1153035 (-) 549 WP_172089675.1 hypothetical protein -
  KQ224_RS05915 (KQ224_05915) - 1153106..1153633 (-) 528 WP_024397302.1 transcription repressor NadR -
  KQ224_RS05920 (KQ224_05920) - 1153737..1153992 (-) 256 Protein_1165 VOC family protein -
  KQ224_RS05930 (KQ224_05930) - 1154177..1154677 (+) 501 WP_216806195.1 NUDIX domain-containing protein -
  KQ224_RS05935 (KQ224_05935) - 1154666..1154956 (-) 291 WP_216806196.1 hypothetical protein -
  KQ224_RS05940 (KQ224_05940) - 1155017..1155382 (+) 366 WP_216806197.1 MerR family transcriptional regulator -
  KQ224_RS05945 (KQ224_05945) - 1155379..1155891 (+) 513 WP_216806198.1 adenylate kinase -
  KQ224_RS05950 (KQ224_05950) gltX 1155932..1157386 (-) 1455 WP_216806199.1 glutamate--tRNA ligase -
  KQ224_RS11475 (KQ224_05955) - 1157775..1158674 (-) 900 WP_367889867.1 MFS transporter -
  KQ224_RS11480 - 1158614..1158778 (-) 165 WP_253952788.1 hypothetical protein -
  KQ224_RS11485 - 1158891..1159055 (-) 165 WP_253952789.1 hypothetical protein -
  KQ224_RS05960 (KQ224_05960) - 1159140..1159814 (-) 675 WP_216806200.1 hypothetical protein -
  KQ224_RS05965 (KQ224_05965) - 1159819..1160265 (-) 447 WP_216806201.1 LytTR family DNA-binding domain-containing protein -
  KQ224_RS05970 (KQ224_05970) - 1160436..1161194 (-) 759 WP_216806202.1 TIGR00266 family protein -
  KQ224_RS05975 (KQ224_05975) - 1161393..1161887 (-) 495 WP_216806203.1 carbonic anhydrase -
  KQ224_RS05980 (KQ224_05980) radA 1162011..1163378 (-) 1368 WP_130554220.1 DNA repair protein RadA Machinery gene
  KQ224_RS05985 (KQ224_05985) - 1163404..1163937 (-) 534 WP_174846598.1 histidine phosphatase family protein -
  KQ224_RS05990 (KQ224_05990) - 1163944..1164387 (-) 444 WP_024388517.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49884.38 Da        Isoelectric Point: 6.1911

>NTDB_id=577579 KQ224_RS05980 WP_130554220.1 1162011..1163378(-) (radA) [Streptococcus parasuis strain H35]
MIIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPSMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=577579 KQ224_RS05980 WP_130554220.1 1162011..1163378(-) (radA) [Streptococcus parasuis strain H35]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGCCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTTGAAGTCGCTGAAGTCAAGAACGAGCGGGTTAGCCTGACAGGTG
AGAAGACCCGTCCAATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAACATGGAGGAGTTTAAC
CGTGTCCTCGGTGGCGGTGTGGTGCCAGGGAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGCAAATCCACCCTACT
CTTGCAGGTTTCGACCCAGCTTTCGACCATTGGTACCGTCCTCTATGTGTCCGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAAAAGATTAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATTTCTAGCGTACAAGG
TTCTGTCAGTCAGGTGCGTGAAGTGACCAATGAACTCATGCAAATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GTCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAAGGC
GAGCGGCAGCATACCTTTCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGAGCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCTGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAAGATAAGCCAACCAACCCACAGGAGTGCTTTATAGGCGAGATTGGCCTGACAGGTGAA
ATCCGCCGTGTCAATCGGATTGAGCAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCTCCTAAAAA
TTCTCTGACCGGTATCAAGGTGCCCAAGGAAATAACGGTTATCGGCGTGACAACAATTGGCGAAGTTCTGCAAAAAGTGT
TTAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q8L3V7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.56

0.62