Detailed information NTG0577578

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: KQ224_RS05710
• Genome accession: NZ_CP076721
• Coordinates: 1118813..1121266 (-)
• Length: 817 a.a.
• NCBI ID: WP_216806172.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain H35
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1113813..1126266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ224_RS05685 (KQ224_05685)	hslO	1114151..1115017 (+)	867	WP_171989603.1	Hsp33 family molecular chaperone HslO	-
KQ224_RS05690 (KQ224_05690)	dusB	1115010..1116014 (+)	1005	WP_216806169.1	tRNA dihydrouridine synthase DusB	-
KQ224_RS05695 (KQ224_05695)	-	1116048..1116830 (-)	783	WP_216806170.1	NUDIX domain-containing protein	-
KQ224_RS05700 (KQ224_05700)	pnuC	1116823..1117608 (-)	786	WP_216807313.1	nicotinamide riboside transporter PnuC	-
KQ224_RS05705 (KQ224_05705)	-	1117648..1118685 (-)	1038	WP_216806171.1	AAA family ATPase	-
KQ224_RS05710 (KQ224_05710)	clpC	1118813..1121266 (-)	2454	WP_216806172.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
KQ224_RS05715 (KQ224_05715)	-	1121272..1121730 (-)	459	WP_171989598.1	CtsR family transcriptional regulator	-
KQ224_RS05720 (KQ224_05720)	-	1121874..1122212 (+)	339	WP_216806173.1	thioredoxin domain-containing protein	-
KQ224_RS05725 (KQ224_05725)	tsf	1122375..1123415 (-)	1041	WP_216806174.1	translation elongation factor Ts	-
KQ224_RS05730 (KQ224_05730)	rpsB	1123570..1124346 (-)	777	WP_171989595.1	30S ribosomal protein S2	-
KQ224_RS05735 (KQ224_05735)	-	1124546..1125529 (-)	984	WP_216806175.1	DUF4767 domain-containing protein	-

Sequence

Protein

• Length: 817 a.a.
• Molecular weight: 90667.12 Da
• Isoelectric Point: 5.6799

>NTDB_id=577578 KQ224_RS05710 WP_216806172.1 1118813..1121266(-) (clpC) [Streptococcus parasuis strain H35]
MKFSTGLQRVFEDAQLIAQRYACDHLETWHILLAFVINHDTVAGAVLAEYPMSISDFEHATFVVTEKVYREELDKFNILS
SSKRLEDTAQFARKIAEVVKAKELGSEHLFQAMLLDKRSTASQILDKVGFHFEEIEDEFRFVDLRKNLEYRAGFTKEDLK
AIRSVMKGGKAKTASVGQMMGMPPTAQSGGLEDYTRDLTALAREGKIEPVIGRDAEISRMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVAEGDVPVSLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQDEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHRVRIGDATV
ETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQVEETGLSTIDKALMAGKYKAVSKLLIKTTEKNLLSQNDDLEV
TEDDILETLSRLSGIPVAKLSQSDTKKYLNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLL
QVLDDGVLTDSKGRKVDFSNTVIIMTSNLGATALRDDKTVGFGAADLSKDHKEMEKRIFEELKKTYRPEFINRIDEKVVF
HSLTESDMLDVVKVMVKPLIVVAASKGILLKFQPSALKLLAKEGYDTEMGARPLRRLLQTKLEDPMAEMLLREDLGAGMV
LKVGVKANQLKFESVNE

Nucleotide

• Length: 2454 bp

>NTDB_id=577578 KQ224_RS05710 WP_216806172.1 1118813..1121266(-) (clpC) [Streptococcus parasuis strain H35]
ATGAAATTTTCAACAGGCTTACAACGGGTTTTTGAAGATGCTCAGTTGATTGCCCAAAGATATGCATGCGATCATTTAGA
AACGTGGCATATTTTGCTAGCATTTGTCATCAATCATGATACGGTAGCTGGTGCTGTTTTGGCAGAATACCCAATGAGTA
TTTCAGATTTCGAACATGCTACTTTTGTTGTTACAGAAAAAGTATACCGTGAAGAATTGGATAAATTTAATATTCTATCC
TCCTCAAAAAGATTAGAGGATACAGCTCAGTTCGCTAGAAAGATTGCAGAAGTCGTTAAGGCAAAAGAATTAGGAAGCGA
GCATTTGTTTCAGGCAATGCTGTTAGACAAACGTTCAACCGCAAGTCAAATTCTAGATAAAGTAGGTTTTCATTTTGAAG
AGATAGAAGATGAATTCCGTTTTGTTGATTTGCGTAAAAACTTAGAGTATCGTGCAGGGTTCACCAAAGAGGATTTGAAA
GCTATCCGTAGCGTGATGAAAGGTGGAAAGGCTAAAACAGCAAGTGTAGGTCAAATGATGGGCATGCCACCAACTGCTCA
AAGTGGTGGATTGGAGGATTATACACGAGATCTGACAGCCTTAGCCCGCGAGGGTAAAATTGAACCTGTTATTGGTCGCG
ATGCTGAAATTTCACGGATGATTCAAATTCTATCACGTAAAACGAAGAACAATCCTGTTTTGGTTGGCGATGCAGGTGTT
GGGAAAACAGCACTAGCATTAGGTCTTGCTCAGCGTGTTGCAGAAGGAGATGTTCCTGTCAGTTTAGCAAAGATGCGTGT
TTTGGAACTTGATTTGATGAATGTTATTGCAGGAACTCGTTTCCGTGGTGACTTTGAAGAGCGGATGAATAATATCATCA
ATGATATTGAAGAAGATGGTCAGGTTATCCTCTTTATCGATGAATTACATACTATTATGGGGTCGGGTTCGGGAATTGAT
TCAACCTTAGATGCTGCCAATATTCTCAAACCGGCCTTGGCTCGAGGGACCCTACGCACTGTTGGTGCAACGACACAGGA
TGAATACCAAAAGCATATTGAAAAAGATGCTGCCCTGGTCCGTCGTTTTGCCAAAGTGACCATTGAAGAGCCGACAGTTG
AGGACAGTATTGCCATTTTGACCGGGCTTAAAGGGACTTTTGAAAAATACCATAGGGTCCGTATTGGAGACGCGACTGTT
GAAACAGCTGTGACTTACGCCAAGAGGTATCTGACTAGTAAAAACTTGCCAGACTCAGCAATTGACTTGTTAGATGAAGC
CAGTGCAACTGTACAAAATAGAGTGAAAGGGCAGGTTGAAGAAACAGGTCTTTCGACTATTGATAAAGCTTTGATGGCTG
GAAAATACAAGGCTGTCAGTAAGCTCTTAATCAAGACTACAGAAAAGAATCTTTTGAGTCAAAACGATGACTTAGAAGTG
ACAGAAGATGACATTTTGGAAACACTTAGTCGCTTATCAGGTATCCCAGTAGCCAAGCTCAGCCAATCAGATACTAAGAA
GTACCTGAATCTGGAAGCAGAATTGCACAAACGTGTGATTGGGCAGGAAGAAGCTATTTCTGCCGTTAGTAGAGCTATCC
GCCGTAATCAGTCGGGGATTCGGACAGGTCGTAGACCGATTGGTTCCTTTATGTTCTTAGGACCAACTGGTGTCGGTAAG
ACTGAGCTTGCTAAAGCCTTGGCAGAGGTTCTCTTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCTGAGTATAT
GGAGAAATTTGCGGCCAGCCGTCTCAATGGAGCGCCTCCAGGCTATGTTGGCTATGAAGAAGGTGGCGAATTAACAGAAA
AAGTTCGTAATAAACCTTATTCTGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCATCCAGATATTTTCAATGTTCTCTTG
CAGGTCTTGGATGACGGTGTCTTGACCGATAGTAAGGGTCGCAAGGTTGATTTCTCCAATACAGTCATTATCATGACATC
AAACTTGGGAGCAACAGCTCTTCGCGATGACAAGACCGTTGGGTTTGGTGCGGCTGATCTGTCCAAAGACCACAAGGAAA
TGGAGAAACGCATTTTTGAAGAATTGAAAAAGACCTATCGTCCTGAATTTATCAACCGTATCGATGAAAAGGTAGTCTTC
CACAGCTTGACAGAATCCGATATGTTGGATGTTGTCAAAGTGATGGTGAAGCCATTGATTGTGGTTGCCGCGAGCAAGGG
AATCCTCCTGAAATTCCAACCATCAGCCCTCAAATTGTTGGCCAAAGAAGGCTACGATACAGAAATGGGTGCTCGCCCTC
TTCGTCGGTTGCTCCAAACAAAATTGGAAGACCCGATGGCAGAAATGCTTTTGCGTGAAGATCTTGGAGCAGGTATGGTT
CTGAAAGTGGGTGTCAAAGCTAACCAACTCAAATTTGAGAGTGTGAATGAATAG

Domains

Predicted by InterproScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (102-137)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-49)

• ATPase family associated with various cellular activities (AAA) (AAA) (233-365)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (723-798)

• AAA lid domain (AAA_lid_9) (372-449)

• AAA domain (Cdc48 subfamily) (AAA_2) (545-716)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae Rx1	71.007	99.633	0.707
clpC	Streptococcus pneumoniae D39	71.007	99.633	0.707
clpC	Streptococcus pneumoniae TIGR4	70.885	99.633	0.706
clpC	Streptococcus mutans UA159	65.767	99.755	0.656
clpC	Streptococcus thermophilus LMG 18311	65.361	100	0.654
clpC	Streptococcus thermophilus LMD-9	65.361	100	0.654
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.619	100	0.496
clpC	Bacillus subtilis subsp. subtilis str. 168	43.149	100	0.439