Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   CCX78_RS04865 Genome accession   NZ_AP017931
Coordinates   947342..948400 (-) Length   352 a.a.
NCBI ID   WP_096584974.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 942342..953400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS04845 (LASAK_00965) - 943259..944182 (+) 924 WP_011374673.1 manganese-dependent inorganic pyrophosphatase -
  CCX78_RS04850 (LASAK_00966) - 944239..944592 (+) 354 WP_096584972.1 hypothetical protein -
  CCX78_RS04855 (LASAK_00967) - 944693..946486 (+) 1794 WP_025015778.1 heavy metal translocating P-type ATPase -
  CCX78_RS04860 (LASAK_00968) thiT 946526..947128 (-) 603 WP_011374670.1 energy-coupled thiamine transporter ThiT -
  CCX78_RS04865 (LASAK_00969) xerS 947342..948400 (-) 1059 WP_096584974.1 tyrosine recombinase XerS Machinery gene
  CCX78_RS04870 (LASAK_00970) - 949219..950226 (-) 1008 WP_011374668.1 NADP-dependent oxidoreductase -
  CCX78_RS04875 (LASAK_00971) - 950228..950809 (-) 582 WP_011374667.1 TetR/AcrR family transcriptional regulator -
  CCX78_RS04880 (LASAK_00972) - 950935..951777 (-) 843 WP_056947629.1 DegV family protein -
  CCX78_RS04885 (LASAK_00973) trhA 951806..952444 (-) 639 WP_016265118.1 PAQR family membrane homeostasis protein TrhA -
  CCX78_RS04890 (LASAK_00974) - 952605..953105 (+) 501 WP_056947631.1 DUF1836 domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 40776.72 Da        Isoelectric Point: 9.2979

>NTDB_id=57757 CCX78_RS04865 WP_096584974.1 947342..948400(-) (xerS) [Latilactobacillus sakei strain LK-145]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKANNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFITFMQVDYPSALSNRQLASYKQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=57757 CCX78_RS04865 WP_096584974.1 947342..948400(-) (xerS) [Latilactobacillus sakei strain LK-145]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGCAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCTGATGGCGAACCTTATTTTTACCGGAACGTCA
TGAAAAAAGTTAAACTCCTGAAATCTTCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGC
GATAAAAAACACGACTTCATTACCTTTATGCAAGTCGACTATCCCAGTGCGCTCTCTAATCGCCAACTCGCTTCTTATAA
GCAAAATTGTGAACGAGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(191-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

46.348

100

0.469

Multiple sequence alignment