Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   MQE23_RS36845 Genome accession   NZ_CP094344
Coordinates   8152017..8153051 (-) Length   344 a.a.
NCBI ID   WP_020270200.1    Uniprot ID   S4MXJ9
Organism   Streptomyces sp. HP-A2021     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8147017..8158051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQE23_RS36825 (MQE23_36825) - 8147310..8148602 (+) 1293 WP_243381382.1 extracellular solute-binding protein -
  MQE23_RS36830 (MQE23_36830) - 8148609..8149607 (+) 999 WP_243381383.1 sugar ABC transporter permease -
  MQE23_RS36835 (MQE23_36835) - 8149679..8150443 (+) 765 WP_243382882.1 carbohydrate ABC transporter permease -
  MQE23_RS36840 (MQE23_36840) - 8150497..8151561 (+) 1065 WP_020270199.1 endo-1,4-beta-xylanase -
  MQE23_RS36845 (MQE23_36845) cytR 8152017..8153051 (-) 1035 WP_020270200.1 LacI family DNA-binding transcriptional regulator Regulator
  MQE23_RS36850 (MQE23_36850) - 8153252..8153458 (-) 207 WP_037667161.1 DUF5999 family protein -
  MQE23_RS36855 (MQE23_36855) - 8153856..8154440 (-) 585 WP_243381385.1 hypothetical protein -
  MQE23_RS36860 (MQE23_36860) - 8155000..8156517 (+) 1518 WP_020270597.1 glutamate-cysteine ligase family protein -
  MQE23_RS36865 (MQE23_36865) - 8156585..8157388 (+) 804 WP_020270596.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36276.55 Da        Isoelectric Point: 7.4829

>NTDB_id=577569 MQE23_RS36845 WP_020270200.1 8152017..8153051(-) (cytR) [Streptomyces sp. HP-A2021]
MAAHEAGAGGKVTITEIARQAGVSVPTVSRVVNGRSDVSPQTRARVEDLLLRHGYRKRPAAPGNRAGLLDLVFNNLDSPW
AVEIIRGVEEVAHGAGVGTVVSAIHGRSGDAREWMRNLRARASDGVILVTSALEPTLHEELRILGVPLVVVDPAGSPALD
APTIGAANWSGGMAATEHLLSLGHRRIGLIAGPPRLLCSRARLDGYRAALEGAGIAMDESLVVPGDFRPESGFAACDALL
RLPEPPTAVFAASDQMALGAIEALRRRGLRVPQDMSVVGFDDLPEVRWSAPPLTTVRQPLADMGKLAVRTVLQLTRDEQP
GSPRVELGTDLVIRASTAPPAGRT

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=577569 MQE23_RS36845 WP_020270200.1 8152017..8153051(-) (cytR) [Streptomyces sp. HP-A2021]
GTGGCAGCACATGAGGCCGGAGCCGGGGGAAAGGTCACGATCACGGAGATCGCCCGGCAGGCCGGCGTGTCCGTGCCGAC
CGTGTCCCGCGTCGTCAACGGCCGGTCCGATGTGTCGCCGCAGACCCGGGCCCGCGTCGAGGACCTGCTGCTTCGGCACG
GCTACCGCAAGCGCCCCGCGGCCCCGGGCAACCGTGCCGGCCTGCTCGACCTGGTCTTCAACAACCTCGACAGCCCCTGG
GCCGTGGAGATCATCCGCGGGGTCGAGGAGGTCGCGCACGGGGCCGGGGTCGGCACGGTGGTGTCGGCCATCCACGGGCG
TTCGGGCGACGCCCGCGAGTGGATGCGCAACCTCCGGGCGCGGGCCTCGGACGGCGTCATCCTCGTCACCTCGGCCCTGG
AGCCGACACTCCACGAGGAGCTGCGCATTCTCGGCGTCCCGCTGGTCGTCGTCGACCCGGCGGGCTCGCCCGCCCTGGAC
GCTCCCACCATCGGTGCCGCCAACTGGTCGGGCGGCATGGCGGCCACCGAGCACCTGCTGTCCCTGGGCCACCGCCGGAT
CGGCCTGATCGCGGGGCCGCCGCGGCTGCTGTGCTCGCGGGCCCGGCTGGACGGCTACCGCGCGGCTCTGGAAGGCGCCG
GCATCGCGATGGACGAGTCCCTCGTCGTCCCCGGCGACTTCCGCCCCGAGTCCGGCTTCGCCGCCTGCGACGCCCTGCTC
CGCCTGCCCGAGCCGCCGACCGCCGTGTTCGCGGCCAGCGACCAGATGGCCCTCGGCGCGATCGAGGCACTGCGCCGACG
CGGGCTGCGGGTGCCGCAGGACATGAGCGTGGTCGGTTTCGACGACCTTCCGGAAGTCCGCTGGTCGGCTCCGCCCCTGA
CCACCGTCCGCCAGCCGCTGGCCGACATGGGGAAACTGGCCGTCCGCACGGTGCTCCAACTCACCCGCGACGAACAGCCC
GGCTCACCGCGGGTGGAACTGGGCACGGACCTGGTGATCCGGGCCAGCACGGCGCCTCCGGCGGGGCGGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(13-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S4MXJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.765

98.837

0.363