Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MQE23_RS36145 Genome accession   NZ_CP094344
Coordinates   7986999..7988354 (+) Length   451 a.a.
NCBI ID   WP_243381332.1    Uniprot ID   -
Organism   Streptomyces sp. HP-A2021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7981999..7993354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQE23_RS36120 (MQE23_36120) vraR 7982613..7983239 (-) 627 WP_020272906.1 response regulator transcription factor Regulator
  MQE23_RS36125 (MQE23_36125) - 7983236..7984432 (-) 1197 WP_243381319.1 sensor histidine kinase -
  MQE23_RS36130 (MQE23_36130) - 7984429..7985274 (-) 846 WP_243381321.1 ABC transporter permease -
  MQE23_RS36135 (MQE23_36135) - 7985271..7986143 (-) 873 WP_243381322.1 ABC transporter ATP-binding protein -
  MQE23_RS36140 (MQE23_36140) - 7986286..7986942 (+) 657 WP_243381331.1 vitamin K epoxide reductase family protein -
  MQE23_RS36145 (MQE23_36145) rarA 7986999..7988354 (+) 1356 WP_243381332.1 replication-associated recombination protein A Machinery gene
  MQE23_RS36150 (MQE23_36150) rpsD 7988655..7989269 (+) 615 WP_010046470.1 30S ribosomal protein S4 -
  MQE23_RS36155 (MQE23_36155) - 7989448..7989888 (+) 441 WP_082319874.1 DUF948 domain-containing protein -
  MQE23_RS36160 (MQE23_36160) - 7989898..7990269 (+) 372 WP_020272913.1 hypothetical protein -
  MQE23_RS36165 (MQE23_36165) alaS 7990269..7992941 (+) 2673 WP_020272914.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48176.58 Da        Isoelectric Point: 6.2997

>NTDB_id=577568 MQE23_RS36145 WP_243381332.1 7986999..7988354(+) (rarA) [Streptomyces sp. HP-A2021]
MEPDLFTAAAEERQEKEPSSSPLAVRMRPRTLDEVVGQRHLLKPGSPLRRLVGEGASGPAGPSSVILWGPPGTGKTTLAY
VVSKATNARFVELSAITAGVKEVRAVIDGARRASGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDIKGLVQRALTDERGLKGAVALPEETENHLLRIAGGDARRALTALEAAAGAALDKGETE
IGLTTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
SIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAALEDVRKGLAGPVPAHLRDSHYKGATKLGHGQGYVY
PHDLPEGIAAQQYAPDALKDREYYEPTRHGAEARYADAVEWTRKNLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=577568 MQE23_RS36145 WP_243381332.1 7986999..7988354(+) (rarA) [Streptomyces sp. HP-A2021]
GTGGAGCCCGACCTGTTCACCGCCGCAGCAGAAGAACGCCAGGAGAAGGAGCCGTCCAGCAGCCCCCTGGCGGTGCGGAT
GCGCCCGCGCACCCTCGACGAGGTCGTGGGCCAGCGGCATCTGCTGAAGCCGGGCTCGCCCCTGCGCAGACTGGTCGGCG
AGGGCGCCTCCGGCCCGGCCGGCCCCTCCTCGGTGATCCTCTGGGGCCCGCCCGGCACCGGCAAGACCACCCTGGCGTAC
GTGGTCTCCAAGGCCACCAACGCCCGCTTCGTCGAACTCTCGGCGATCACCGCGGGCGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCCCGCCGCGCCTCCGGCGGATTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTCCCGGCCGTCGAGAACCGCTGGGTGACACTGATCGCGGCGACGACGGAGAACCCGTACTTC
TCGGTGATCTCCCCCCTGCTGTCCCGCTCCCTGCTGCTCACCCTCGAACCGCTCACGGACGACGACATCAAGGGCCTCGT
CCAGCGGGCCCTGACCGACGAGCGCGGTCTCAAGGGCGCCGTCGCCCTCCCCGAGGAGACCGAGAACCACCTCCTGCGCA
TCGCCGGCGGCGACGCCCGCCGCGCCCTGACCGCCCTGGAGGCCGCCGCCGGAGCCGCCCTGGACAAGGGCGAGACGGAG
ATCGGCCTGACCACCCTGGAGGAGACGGTCGACCGGGCGGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCCAGCGCCCTGATCAAGTCCATCCGCGGCTCCGACGTCGACGCCGCCCTGCACTACCTGGCCCGGATGATCGAGGCCG
GCGAGGACCCCCGCTTCATCGCCCGGCGCCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGACCCGAACGCGCTG
TCCATCGCGGTCGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCCGCCCTCACCCTCAGCCACGCCACCAT
CGCCCTCGCCCTGGCGCCCAAGTCCAACGCCGCGACGACCGCGATCGGCGCCGCCCTGGAGGACGTACGCAAGGGACTGG
CCGGGCCCGTGCCCGCGCACCTGCGCGACAGCCACTACAAGGGCGCCACCAAGCTCGGCCACGGCCAGGGCTACGTCTAC
CCGCACGACCTGCCCGAGGGCATCGCCGCCCAGCAGTACGCCCCGGACGCTCTGAAGGACCGCGAGTACTACGAGCCCAC
CCGGCACGGCGCGGAGGCCCGCTACGCGGACGCGGTCGAGTGGACCCGGAAGAACCTCGGTCGAAAGCGGTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.88

96.009

0.421