Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KQ220_RS05160 Genome accession   NZ_CP076709
Coordinates   1127522..1128151 (+) Length   209 a.a.
NCBI ID   WP_061350915.1    Uniprot ID   -
Organism   Escherichia coli O158:H23 strain CFIAFB20140388     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122522..1133151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ220_RS05140 (KQ220_05140) ycbZ 1122911..1124671 (-) 1761 WP_216781405.1 AAA family ATPase -
  KQ220_RS05145 (KQ220_05145) matP 1124857..1125309 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KQ220_RS05150 (KQ220_05150) ompA 1125385..1126437 (-) 1053 WP_000750418.1 porin OmpA -
  KQ220_RS05155 (KQ220_05155) sulA 1126794..1127303 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KQ220_RS05160 (KQ220_05160) sxy/tfoX 1127522..1128151 (+) 630 WP_061350915.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KQ220_RS05165 (KQ220_05165) yccS 1128114..1130276 (-) 2163 WP_000875041.1 YccS family putative transporter -
  KQ220_RS05170 (KQ220_05170) yccF 1130286..1130732 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KQ220_RS05175 (KQ220_05175) helD 1130855..1132909 (+) 2055 WP_076795355.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24118.96 Da        Isoelectric Point: 9.2180

>NTDB_id=577540 KQ220_RS05160 WP_061350915.1 1127522..1128151(+) (sxy/tfoX) [Escherichia coli O158:H23 strain CFIAFB20140388]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCAKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=577540 KQ220_RS05160 WP_061350915.1 1127522..1128151(+) (sxy/tfoX) [Escherichia coli O158:H23 strain CFIAFB20140388]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGCAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995