Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   CCX78_RS04610 Genome accession   NZ_AP017931
Coordinates   892609..894054 (+) Length   481 a.a.
NCBI ID   WP_096584919.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 887609..899054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS04575 (LASAK_00910) - 887838..888206 (+) 369 WP_096584914.1 N-acetyltransferase -
  CCX78_RS04580 (LASAK_00911) - 888215..888970 (+) 756 WP_096584917.1 segregation and condensation protein A -
  CCX78_RS04585 (LASAK_00912) scpB 888954..889577 (+) 624 WP_016265182.1 SMC-Scp complex subunit ScpB -
  CCX78_RS04590 (LASAK_00913) - 889580..890350 (+) 771 WP_011374726.1 pseudouridine synthase -
  CCX78_RS04595 (LASAK_00914) - 890666..891241 (+) 576 WP_016265180.1 ECF transporter S component -
  CCX78_RS04600 (LASAK_00915) - 891317..891547 (-) 231 WP_076639141.1 ferredoxin -
  CCX78_RS04605 (LASAK_00916) - 891584..892612 (+) 1029 WP_076639140.1 helix-turn-helix domain-containing protein -
  CCX78_RS04610 (LASAK_00917) recS 892609..894054 (+) 1446 WP_096584919.1 RecQ family ATP-dependent DNA helicase Machinery gene
  CCX78_RS04615 (LASAK_00918) - 894123..894830 (+) 708 WP_096584922.1 LysM peptidoglycan-binding domain-containing protein -
  CCX78_RS04620 (LASAK_00919) cmk 894897..895556 (+) 660 WP_016265175.1 (d)CMP kinase -
  CCX78_RS04625 (LASAK_00920) rpsA 895651..896862 (+) 1212 WP_096584925.1 30S ribosomal protein S1 -
  CCX78_RS04630 (LASAK_00921) der 897096..898406 (+) 1311 WP_096584928.1 ribosome biogenesis GTPase Der -
  CCX78_RS04635 (LASAK_00922) - 898613..898888 (+) 276 WP_011374717.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54483.17 Da        Isoelectric Point: 5.0282

>NTDB_id=57754 CCX78_RS04610 WP_096584919.1 892609..894054(+) (recS) [Latilactobacillus sakei strain LK-145]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIQSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKYQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAT
IKAQLQPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLASLVQKSQGPGIIYFSS
RQKTMEIAAFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRYVIHYHLPQNIESYLQEI
GRAGRDGQPAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGNEFELLRRYQQLGMTEEEVTALLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLDLEQAINYKTAETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=57754 CCX78_RS04610 WP_096584919.1 892609..894054(+) (recS) [Latilactobacillus sakei strain LK-145]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTCAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACTGGGACCGGGAAATCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTAGCCCAATTGAAT
TATCAAGGGGAAAAACGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAATACCAGTTACTGACGCATTTAGC
GGATTACCGCTTTATTTTTATGGCACCGGAGACTATCAGTCAACCAGAAGTGATTCAGGCGCTTCAACGTTGTCAAATCG
ATTTGTTTGTGGTTGATGAGGCCCATTGTATTTCACAGTGGGGAATTGATTTTAGACCGGACTATTTAGTTTTAGCAACC
ATCAAGGCCCAATTACAGCCAACTGCAACACTGGCTTTGACGGCGACTGCTAATGATCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCAAAGAATCAATTTTTAGCCAGCTTAGTGCAAAAAAGCCAAGGTCCCGGGATTATTTATTTTTCAAGT
CGGCAAAAGACGATGGAGATTGCGGCCTTTTTGCAGCAAGAAACTGATCTGAAGATTGCGTATTACCACGCGGCGTTATC
AACCCAGGAGCGGTATTTGATTCAACAACAATTTATGCAAGGGCAACTTGATTTGATTTGTACAACCAATGCTTTTGGGA
TGGGGATTAATAAGGCGGATATTCGCTATGTGATTCATTATCACCTGCCACAAAACATCGAAAGTTACTTGCAAGAAATC
GGACGGGCAGGCCGCGATGGGCAACCAGCCTATGCTTTAGTCCTAACAACTCCGCAAGATTTATATTTACAACAATCACT
CGTTTCATTTGGAATTCCGGAACCAGGCCTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
ATGAATTTGAACTGTTGCGTCGTTACCAACAACTGGGGATGACCGAAGAAGAGGTGACTGCCTTATTGGATAATCGTCAA
ACCGAAAAGCAGTTTTCACTACAAACGATGCTGGATTATTTGACCCTCAAGGGCTGTCGACGGCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAGGCTATTAATTATAAAACCGCTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-326)

DEAD/DEAH box helicase (DEAD)

(22-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

41.814

93.971

0.393

Multiple sequence alignment