Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KQ217_RS21795 Genome accession   NZ_CP076706
Coordinates   4528026..4528655 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O170:H18 strain CFIAFB20120266     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4523026..4533655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ217_RS21775 (KQ217_21775) ycbZ 4523426..4525186 (-) 1761 WP_000156503.1 AAA family ATPase -
  KQ217_RS21780 (KQ217_21780) matP 4525372..4525824 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  KQ217_RS21785 (KQ217_21785) ompA 4525902..4526942 (-) 1041 WP_001441917.1 porin OmpA -
  KQ217_RS21790 (KQ217_21790) sulA 4527298..4527807 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  KQ217_RS21795 (KQ217_21795) sxy/tfoX 4528026..4528655 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KQ217_RS21800 (KQ217_21800) yccS 4528618..4530780 (-) 2163 WP_000875041.1 YccS family putative transporter -
  KQ217_RS21805 (KQ217_21805) yccF 4530790..4531236 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KQ217_RS21810 (KQ217_21810) helD 4531359..4533413 (+) 2055 WP_216803890.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=577537 KQ217_RS21795 WP_000839153.1 4528026..4528655(+) (sxy/tfoX) [Escherichia coli O170:H18 strain CFIAFB20120266]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=577537 KQ217_RS21795 WP_000839153.1 4528026..4528655(+) (sxy/tfoX) [Escherichia coli O170:H18 strain CFIAFB20120266]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1