Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KQ221_RS14465 Genome accession   NZ_CP076704
Coordinates   2944614..2945243 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O8:H28 strain BMH-17-0027     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2939614..2950243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ221_RS14450 (KQ221_14450) helD 2939856..2941910 (-) 2055 WP_001377983.1 DNA helicase IV -
  KQ221_RS14455 (KQ221_14455) yccF 2942033..2942479 (+) 447 WP_001261231.1 YccF domain-containing protein -
  KQ221_RS14460 (KQ221_14460) yccS 2942489..2944651 (+) 2163 WP_000875015.1 YccS family putative transporter -
  KQ221_RS14465 (KQ221_14465) sxy/tfoX 2944614..2945243 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KQ221_RS14470 (KQ221_14470) sulA 2945462..2945971 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KQ221_RS14475 (KQ221_14475) ompA 2946328..2947368 (+) 1041 WP_000750416.1 porin OmpA -
  KQ221_RS14480 (KQ221_14480) matP 2947444..2947896 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KQ221_RS14485 (KQ221_14485) ycbZ 2948082..2949842 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=577506 KQ221_RS14465 WP_000839153.1 2944614..2945243(-) (sxy/tfoX) [Escherichia coli O8:H28 strain BMH-17-0027]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=577506 KQ221_RS14465 WP_000839153.1 2944614..2945243(-) (sxy/tfoX) [Escherichia coli O8:H28 strain BMH-17-0027]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1