Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MQE23_RS07825 Genome accession   NZ_CP094344
Coordinates   1724883..1726958 (+) Length   691 a.a.
NCBI ID   WP_243378648.1    Uniprot ID   -
Organism   Streptomyces sp. HP-A2021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1719883..1731958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQE23_RS07805 (MQE23_07805) - 1720855..1721649 (+) 795 WP_020277643.1 IclR family transcriptional regulator -
  MQE23_RS07810 (MQE23_07810) - 1721707..1722162 (-) 456 WP_243378646.1 VOC family protein -
  MQE23_RS07815 (MQE23_07815) - 1722361..1723755 (+) 1395 WP_243378647.1 glycoside hydrolase family 16 protein -
  MQE23_RS07820 (MQE23_07820) - 1723820..1724707 (-) 888 WP_037674437.1 AraC family transcriptional regulator -
  MQE23_RS07825 (MQE23_07825) recP/tkt 1724883..1726958 (+) 2076 WP_243378648.1 transketolase Machinery gene
  MQE23_RS07830 (MQE23_07830) tal 1726978..1728123 (+) 1146 WP_243378649.1 transaldolase -
  MQE23_RS07835 (MQE23_07835) zwf 1728120..1729787 (+) 1668 WP_020277649.1 glucose-6-phosphate dehydrogenase -
  MQE23_RS07840 (MQE23_07840) opcA 1729784..1730719 (+) 936 WP_243378650.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 74516.03 Da        Isoelectric Point: 4.9307

>NTDB_id=577499 MQE23_RS07825 WP_243378648.1 1724883..1726958(+) (recP/tkt) [Streptomyces sp. HP-A2021]
MSTQTADSFEWTELDRRAVDTARLLAADAVQRVGNGHPGTAMSLAPAAYTIFQKVMRHDPADPEWTGRDRFVLSPGHTSL
TLYTQLYLAGYELELDDLKAFRTHGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPDAPEGESPFD
HTVWAIVSDGDLQEGVSAEASSLAGHQKLGNLVFLYDDNHISIEGDTATAFSEDVLKRYEAYGWHVQRIEPHEDGDVDVH
ALYAALKEAQAETGRPSIIAMRTIIAWPAPNARNTEASHGSALGEDEVAATKRLLGFDPEKTFEVADEVLAHTRRALDRG
AEAHAAWDKRIAAWRGENPERAATFDRVSKGELPAGWEDALPVFEPGKAVATRAASGKVLQSLGAVVPELWGGSADLAGS
NNTTIDKTSSFLPEGNPLPEADPYGRTIHFGIREFSMAAEMNGIALHGNTRVYGGTFLVFSDYMRNAVRMSALMQLPVTY
VWTHDSVGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETALAWAEILRRHTTDPAPHGLALTRQGVPTYEPNPDAAR
GGYVRAEAEGGEPQVILIATGSEVHLAVEARERLEAAGVPTRVVSMPSVEWFEEQPRAYRDSVLPPSVKARVAVEAGIGL
TWHRFTGDAGRIVSLEHFGASADARTLFAEYGFTPENVVAAARESLAAVRG

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=577499 MQE23_RS07825 WP_243378648.1 1724883..1726958(+) (recP/tkt) [Streptomyces sp. HP-A2021]
ATGAGCACGCAGACAGCGGACAGCTTCGAATGGACCGAACTCGACCGGCGTGCCGTCGACACCGCCCGTCTGCTGGCGGC
CGATGCCGTCCAGCGGGTCGGAAACGGCCATCCCGGCACGGCGATGAGCCTGGCGCCGGCCGCCTACACGATCTTTCAGA
AGGTGATGCGGCACGATCCGGCCGACCCGGAGTGGACCGGCCGTGACCGATTCGTCCTCTCCCCTGGCCACACGTCGCTG
ACCCTCTACACGCAGCTGTACCTCGCGGGCTACGAGCTGGAGCTTGACGACCTGAAGGCGTTCCGCACGCACGGCTCGAA
GACGCCCGGCCACCCCGAGTACGGACACACCGCGGGCGTGGAGACCACGACCGGCCCGCTCGGCCAGGGCGTCGCGAACG
CGGTCGGCATGGCGATGGCCGCCCGTTACGAGCGTGGCCTGTTCGACCCCGACGCCCCCGAGGGCGAGTCTCCCTTCGAC
CACACCGTCTGGGCCATCGTCTCCGACGGCGACCTCCAGGAGGGCGTCTCCGCCGAGGCCTCCTCGCTGGCCGGCCACCA
GAAGCTCGGCAACCTGGTCTTCCTCTACGACGACAACCACATCTCCATCGAGGGCGACACCGCGACCGCGTTCTCCGAGG
ACGTGCTGAAGCGGTACGAGGCGTACGGCTGGCACGTGCAGCGGATCGAGCCGCACGAGGACGGCGACGTCGACGTGCAC
GCGCTGTACGCGGCGCTGAAGGAGGCTCAGGCCGAGACCGGGCGCCCCTCCATCATCGCGATGCGCACCATCATCGCCTG
GCCGGCGCCGAACGCGCGCAACACCGAGGCCTCCCACGGCTCGGCGCTCGGCGAGGACGAGGTCGCCGCCACCAAGCGCC
TCCTCGGCTTCGACCCGGAGAAGACCTTCGAGGTCGCCGACGAGGTGCTGGCGCACACCCGCCGGGCCCTGGACCGGGGC
GCCGAGGCGCACGCCGCCTGGGACAAGCGGATCGCCGCCTGGCGCGGTGAGAACCCGGAGCGCGCCGCCACCTTCGACCG
GGTCAGCAAGGGTGAGCTGCCCGCCGGCTGGGAGGACGCCCTGCCGGTGTTCGAGCCGGGCAAGGCGGTCGCCACCCGTG
CCGCGTCCGGCAAGGTGCTCCAGTCCCTCGGCGCGGTCGTCCCCGAGCTGTGGGGCGGCTCGGCCGACCTGGCCGGCTCG
AACAACACCACCATCGACAAGACGTCGTCCTTCCTGCCGGAGGGCAACCCGCTGCCGGAGGCCGACCCGTACGGCCGGAC
GATCCACTTCGGCATCCGCGAGTTCTCCATGGCCGCGGAGATGAACGGCATCGCGCTGCACGGCAACACGCGCGTCTACG
GCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTCCGGATGTCGGCCCTGATGCAGCTGCCGGTGACGTAC
GTGTGGACGCACGACTCCGTCGGCCTGGGCGAGGACGGCCCGACCCACCAGCCCGTCGAGCACCTGGCGTCGCTGCGGGC
CATCCCGGGCCTGAACGTCGTACGCCCGGCCGACGCCAACGAGACCGCGCTCGCCTGGGCCGAGATCCTCCGGCGGCACA
CCACCGACCCGGCCCCGCACGGTCTCGCGCTCACCCGCCAGGGCGTGCCCACGTACGAGCCGAACCCGGACGCGGCACGC
GGCGGTTACGTGCGGGCCGAGGCGGAGGGCGGCGAGCCGCAGGTGATCCTGATCGCCACCGGTTCCGAGGTGCACCTCGC
CGTCGAGGCCCGTGAGCGGCTCGAGGCGGCGGGTGTGCCCACCCGGGTGGTGTCGATGCCGTCCGTGGAGTGGTTCGAGG
AGCAGCCCCGCGCGTACCGGGACAGCGTCCTGCCGCCGTCCGTGAAGGCCCGGGTCGCGGTCGAGGCCGGTATCGGCCTG
ACCTGGCACCGGTTCACGGGGGACGCGGGACGCATCGTCTCCCTGGAGCACTTCGGCGCCTCCGCAGACGCCAGGACCCT
GTTCGCCGAGTACGGCTTCACCCCCGAGAACGTCGTCGCCGCAGCCCGGGAATCCCTGGCCGCTGTGCGCGGTTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(569-678)

Transketolase, pyrimidine binding domain (Transket_pyr)

(369-548)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(15-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

45.481

97.685

0.444