Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KRG72_RS08545 Genome accession   NZ_CP076703
Coordinates   1722441..1723802 (-) Length   453 a.a.
NCBI ID   WP_258256282.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717441..1728802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS08525 (KRG72_08535) gltX 1718758..1720215 (-) 1458 WP_258255086.1 glutamate--tRNA ligase -
  KRG72_RS08530 (KRG72_08540) - 1720338..1720835 (-) 498 WP_258255087.1 LURP-one-related/scramblase family protein -
  KRG72_RS08535 (KRG72_08545) - 1720874..1721800 (-) 927 WP_074964949.1 aldo/keto reductase family oxidoreductase -
  KRG72_RS08540 (KRG72_08550) - 1721828..1722325 (-) 498 WP_258255088.1 carbonic anhydrase -
  KRG72_RS08545 (KRG72_08555) radA 1722441..1723802 (-) 1362 WP_258256282.1 DNA repair protein RadA Machinery gene
  KRG72_RS08550 (KRG72_08560) - 1723838..1724284 (-) 447 WP_258255089.1 dUTP diphosphatase -
  KRG72_RS08555 (KRG72_08565) - 1724311..1725078 (-) 768 WP_258255090.1 epoxyqueuosine reductase QueH -
  KRG72_RS08560 (KRG72_08570) - 1725279..1726295 (+) 1017 WP_015695767.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  KRG72_RS08565 (KRG72_08575) galU 1726366..1727280 (+) 915 WP_074561114.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KRG72_RS08570 (KRG72_08580) - 1727341..1728012 (-) 672 WP_258255095.1 rhomboid family intramembrane serine protease -
  KRG72_RS08575 (KRG72_08585) - 1728009..1728536 (-) 528 WP_074869468.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49516.90 Da        Isoelectric Point: 5.8277

>NTDB_id=577487 KRG72_RS08545 WP_258256282.1 1722441..1723802(-) (radA) [Streptococcus equinus strain S1]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAEKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHSFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFIKVYAPKNSLAGIDIPETIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=577487 KRG72_RS08545 WP_258256282.1 1722441..1723802(-) (radA) [Streptococcus equinus strain S1]
ATCGCTAAGAAGAAAACAACGTTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAGTATTTAGGGCGTTGCCCAAACTG
TTCGTCATGGACGTCGTTTGTTGAAGAAGTTGAGGTGCAAGAAGTTAAAAATGCGCGTGTCAGTTTGACAGGTGAAAAGA
GCAAGCCAACCAAATTAAAAGATGTGAGCTCGATTAACTACTCACGCACGAAGACAGACATGGATGAATTTAACCGTGTG
CTTGGTGGCGGTGTGGTGCCAGGCAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACGCTTCTTTTGCA
GGTTTCGATTCAGCTGGCAGAGAAAGGAACGGTTCTTTACGTTTCTGGTGAAGAATCAGCTGAGCAGATTAAACTACGTA
GTGAACGTCTTGGCGATATTGACAATGAATTTTACCTTTATGCTGAGACTAATATGCAAGCCATTCGTGCGCAGATTGAG
CAAATTCAACCTGATTTCTTGATTATTGACTCGATTCAAACCATTATGAGCCCTGATATTTCTGGGGTTCAAGGGTCAGT
ATCACAAGTGCGTGAAGTGACAGCAGAGCTTATGCAACTGGCTAAGACCAACAACATCGCAACCTTTATCGTTGGTCATG
TGACTAAGGAAGGGCAGCTTGCTGGGCCGCGTATGCTTGAGCATATGGTGGATACAGTACTCTATTTTGAAGGGGAACGT
CATCATTCTTTCCGTATTTTGCGTGCCGTGAAAAATCGTTTTGGTTCGACAAATGAAATTGGCATTTTTGAAATGCAATC
TGGCGGGCTTGTCGAGGTGCTCAATCCAAGCCAAGTCTTCTTAGAAGAACGTTTGGATGGTGCGACTGGCTCAGCTATCG
TGGTTACTATGGAAGGAAGTCGTCCGATTTTGGCGGAAGTCCAAGCTTTGGTGACACCGACTGTTTTTGGAAATGCCAAA
CGAACAACGACTGGTCTTGATTTTAACCGAGTCAGCTTGATTATGGCGGTGCTCGAAAAACGTTGTGGGCTTTTGTTGCA
AAATCAAGATGCTTATCTCAAGTCAGCTGGTGGGGTGAAACTTGATGAACCAGCCATTGACTTGGCAGTTGCGGTAGCGA
TTGCGTCAAGCTATAAAGAAAAGCCAACTAATCCCCAAGAAGCTTTCATTGGTGAAATTGGCTTGACGGGTGAGATTCGT
CGTGTCACTCGTATTGAACAACGTATCAATGAAGCGGCAAAGCTTGGCTTTATCAAAGTTTACGCGCCGAAGAATTCTTT
GGCTGGCATTGACATTCCAGAAACGATTGAAGTGGTTGGGGTAACAACTGTCGGAGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.053

99.779

0.879
  radA Streptococcus pneumoniae D39

88.053

99.779

0.879
  radA Streptococcus pneumoniae R6

88.053

99.779

0.879
  radA Streptococcus pneumoniae TIGR4

88.053

99.779

0.879
  radA Streptococcus mitis SK321

88.053

99.779

0.879
  radA Streptococcus mitis NCTC 12261

87.832

99.779

0.876
  radA Bacillus subtilis subsp. subtilis str. 168

61.81

100

0.618