Detailed information NTG0577463

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: KRG72_RS05230
• Genome accession: NZ_CP076703
• Coordinates: 1041655..1043763 (+)
• Length: 702 a.a.
• NCBI ID: WP_258250143.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain S1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1036655..1048763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KRG72_RS05205 (KRG72_05210)	-	1037632..1038570 (+)	939	WP_258250140.1	polysaccharide deacetylase family protein	-
KRG72_RS05210 (KRG72_05215)	-	1039118..1039663 (+)	546	WP_258250141.1	TetR/AcrR family transcriptional regulator	-
KRG72_RS05215 (KRG72_05220)	-	1039696..1040022 (-)	327	WP_258250142.1	hypothetical protein	-
KRG72_RS05220 (KRG72_05225)	rplL	1040148..1040516 (-)	369	WP_004232036.1	50S ribosomal protein L7/L12	-
KRG72_RS05225 (KRG72_05230)	rplJ	1040585..1041088 (-)	504	WP_039696786.1	50S ribosomal protein L10	-
KRG72_RS05230 (KRG72_05235)	clpC	1041655..1043763 (+)	2109	WP_258250143.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
KRG72_RS05235 (KRG72_05240)	-	1043967..1044635 (+)	669	WP_074561098.1	YoaK family protein	-
KRG72_RS05240 (KRG72_05245)	mmuM	1044667..1045611 (-)	945	WP_258250144.1	homocysteine S-methyltransferase	-
KRG72_RS05245 (KRG72_05250)	-	1045622..1046998 (-)	1377	WP_166044283.1	amino acid permease	-
KRG72_RS05250 (KRG72_05255)	yihA	1047135..1047728 (-)	594	WP_074560304.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77330.20 Da
• Isoelectric Point: 4.7266

>NTDB_id=577463 KRG72_RS05230 WP_258250143.1 1041655..1043763(+) (clpC) [Streptococcus equinus strain S1]
MANNQFYGRDPFGNMDDIFNQLMGNMGGYNSENKRYLINGREVTPEEFAQYRQTGKLPGNADYQEGTPTSAPKEDGILAK
LGTNLTERARNNELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDIS
GLEAGTQYRGAFEENIQNMIKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDSFNILMGIRDLYEKHHNVILPDNVLKAAVDFSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDVKSLEKEIAEQKEKQEAAAAKEDYEAALNAKVRIEELQKQIDNHTEDKKVTATVNDVAESVERLTGVPVSNM
GASDIERLKELASRLKGKVIGQDEAVDAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIR
LDMSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEALTGQEDKDMKIMDRIAPYFRPEFLNRFNGIIEFSHLTKDDLNEIVDLMLAEVSKTIAKKGIDLV
VSDDAKQHLIEEGYDEAMGVRPLRRVIEQEIRDKITDFYLDHTDVKHLKADMVDGELVISEK

Nucleotide

• Length: 2109 bp

>NTDB_id=577463 KRG72_RS05230 WP_258250143.1 1041655..1043763(+) (clpC) [Streptococcus equinus strain S1]
ATGGCAAACAATCAATTTTACGGAAGAGATCCTTTTGGAAATATGGATGATATCTTCAACCAATTAATGGGAAACATGGG
AGGATACAATTCAGAAAATAAACGCTACCTAATTAATGGTCGCGAAGTAACCCCTGAAGAATTTGCTCAATACCGACAAA
CTGGTAAACTCCCAGGAAATGCTGATTATCAAGAAGGTACTCCTACTTCTGCACCTAAAGAAGATGGTATCTTGGCTAAA
CTTGGAACAAACTTGACTGAACGTGCACGTAACAACGAACTCGATCCTGTTATCGGACGTAACAAGGAAATTCAAGAAAC
TGCTGAAATCTTGTCACGTCGTACAAAGAACAACCCAGTTCTAGTCGGGGATGCTGGTGTTGGTAAAACAGCTGTCGTTG
AAGGATTAGCGCAAGCTATTGTTAATGGTGACGTGCCTGCTGCTATCAAGAACAAAGAAATCATCTCAATTGATATTTCA
GGCCTTGAAGCTGGTACACAATACCGTGGTGCTTTCGAAGAAAACATCCAAAACATGATTAAAGAAGTCAAAGACGCTGG
TAATATCATCCTCTTCTTTGATGAAATTCATCAAATTCTTGGAGCTGGTTCAACTGGTGGCGACTCTGGTTCTAAAGGTC
TAGCAGATATTCTTAAACCTGCTCTCTCTCGTGGTGAATTGACTGTTATTGGTGCGACTACACAAGACGAATACCGCAAT
ACCATTTTGAAAAATGCTGCGCTCGCTCGTCGTTTCAACGAAGTTAAAGTTAACGCTCCTTCTGCTCAAGACAGCTTTAA
CATCTTGATGGGTATTCGTGATTTGTACGAAAAACACCACAATGTTATCCTTCCAGATAACGTTTTGAAAGCTGCCGTTG
ACTTTTCAATCCAATACATTCCACAACGTAGTTTACCAGATAAAGCAATTGACTTAATCGATATGACTGCTGCTCACCTA
GCTGCACAACATCCTGTAACTGATGTTAAATCTTTGGAAAAAGAAATTGCAGAACAAAAAGAAAAACAAGAAGCCGCTGC
CGCTAAAGAAGATTACGAAGCAGCTCTTAATGCCAAAGTGCGTATCGAAGAATTGCAAAAACAAATCGATAATCACACTG
AAGACAAGAAAGTTACTGCTACCGTTAATGACGTTGCTGAATCCGTTGAACGTCTAACTGGTGTGCCTGTTTCAAACATG
GGCGCAAGCGACATCGAACGTTTGAAAGAATTGGCTAGTCGTTTGAAAGGTAAAGTCATTGGTCAAGACGAAGCTGTAGA
TGCTGTTGCTCGTGCTATTCGCCGTAACCGTGCTGGTTTTGATGAAGGAAACCGACCAATTGGTAGCTTCCTCTTCGTAG
GTCCTACTGGTGTTGGTAAGACAGAACTTGCTAAACAATTGGCTCTTGATATGTTTGGTTCAAAAGATGCAATCATCCGT
CTAGACATGTCTGAGTACTCTGACCGCACAGCCGTTTCTAAGTTGATTGGTACAACTGCTGGTTATGTTGGTTACGATGA
CAACAATAACACACTTACTGAACGTGTTCGTCGTAATCCTTACTCAATCGTTCTTCTTGATGAAATTGAAAAAGCCGACC
CACAAGTTATTACACTTCTTCTTCAAGTTTTGGATGATGGTCGTTTGACTGATGGTCAAGGTAATACAATTAACTTCAAG
AACACTGTTATCATTGCTACATCTAACGCTGGCTTTGGTAATGAAGCTTTGACTGGTCAAGAAGACAAAGACATGAAGAT
TATGGATCGTATCGCTCCATACTTCCGTCCGGAATTCCTTAACCGTTTCAACGGTATCATCGAATTCTCTCACTTGACTA
AGGATGACTTGAACGAAATCGTTGACTTGATGCTAGCTGAAGTTAGCAAGACTATCGCTAAAAAAGGTATTGATTTGGTT
GTCAGCGATGATGCTAAACAACACCTTATCGAAGAAGGTTACGATGAAGCTATGGGTGTTCGACCACTCCGCCGTGTTAT
CGAACAAGAAATTCGCGATAAAATCACTGATTTCTACCTTGATCACACAGATGTTAAACACCTTAAAGCTGATATGGTTG
ACGGAGAACTTGTTATCAGCGAAAAATAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (612-683)

• AAA domain (Cdc48 subfamily) (AAA_2) (445-604)

• AAA lid domain (AAA_lid_9) (262-355)

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.212	99.573	0.48
clpE	Streptococcus mutans UA159	50.313	90.883	0.457
clpE	Streptococcus pneumoniae TIGR4	49.137	90.741	0.446
clpE	Streptococcus pneumoniae Rx1	49.137	90.741	0.446
clpE	Streptococcus pneumoniae D39	49.137	90.741	0.446
clpE	Streptococcus pneumoniae R6	49.137	90.741	0.446
clpC	Bacillus subtilis subsp. subtilis str. 168	45.224	95.442	0.432
clpC	Streptococcus pneumoniae TIGR4	44.127	89.744	0.396
clpC	Streptococcus pneumoniae Rx1	43.354	90.028	0.39
clpC	Streptococcus pneumoniae D39	43.354	90.028	0.39
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.296	88.177	0.382
clpC	Streptococcus thermophilus LMG 18311	43.226	88.319	0.382
clpC	Streptococcus mutans UA159	42.926	88.604	0.38
clpC	Streptococcus thermophilus LMD-9	43.112	87.892	0.379