Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KRG72_RS03080 Genome accession   NZ_CP076703
Coordinates   585816..587618 (+) Length   600 a.a.
NCBI ID   WP_258255834.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 580816..592618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS03055 (KRG72_03055) queA 581524..582552 (-) 1029 WP_258255830.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  KRG72_RS03060 (KRG72_03060) - 582710..583216 (+) 507 WP_074564744.1 VIT1/CCC1 transporter family protein -
  KRG72_RS03065 (KRG72_03065) nagB 583350..584054 (+) 705 WP_258255831.1 glucosamine-6-phosphate deaminase -
  KRG72_RS03070 (KRG72_03070) - 584087..584803 (+) 717 WP_258255832.1 pseudouridine synthase -
  KRG72_RS03075 (KRG72_03075) coiA 584854..585816 (+) 963 WP_258255833.1 competence protein CoiA Machinery gene
  KRG72_RS03080 (KRG72_03080) pepF 585816..587618 (+) 1803 WP_258255834.1 oligoendopeptidase F Regulator
  KRG72_RS03085 (KRG72_03085) - 587690..588217 (+) 528 WP_258255835.1 GNAT family N-acetyltransferase -
  KRG72_RS03090 (KRG72_03090) - 588239..588850 (+) 612 WP_258255836.1 HAD-IA family hydrolase -
  KRG72_RS03095 (KRG72_03095) - 588903..589604 (+) 702 WP_074601492.1 O-methyltransferase -
  KRG72_RS03100 (KRG72_03100) - 589674..590729 (+) 1056 WP_258255837.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69137.18 Da        Isoelectric Point: 4.6990

>NTDB_id=577457 KRG72_RS03080 WP_258255834.1 585816..587618(+) (pepF) [Streptococcus equinus strain S1]
MSDNRSHIDEKYKWDLSTVFATDETWEAELAKLDADLEDAKKYKGHLTESSKDLLVITEHYLDLSRRLEKVYVYASMKND
QDTTVAKYQEYQAKATALYAKYSEVFAFYEPELMQLSAEDFAAFVAETPVLSAYAHFFEQLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPVVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQFQHTYAKTLQTNVKVH
NYDARVHHFKSAREAALSANFIPEAVYDTLIDRVNAHLPLLHRYVELRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLAVFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKGTIFRQAQFAEFEDMIHKADQAGEVLTSEY
LNNLYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASYLADKVVHGTQADIDRYLDYLKAGNSDYPL
NVIAKAGVDMTSSDYLDAAFKIFEDRLNELEALVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=577457 KRG72_RS03080 WP_258255834.1 585816..587618(+) (pepF) [Streptococcus equinus strain S1]
ATGTCAGATAATCGTAGTCATATTGATGAAAAATACAAATGGGATTTAAGCACTGTTTTTGCGACAGATGAAACATGGGA
GGCTGAATTAGCTAAGTTAGATGCTGATTTAGAAGATGCTAAAAAATACAAAGGTCACTTGACAGAATCAAGCAAGGATT
TATTAGTAATTACGGAGCATTATCTTGATTTGTCACGCCGATTGGAAAAAGTTTACGTCTATGCATCAATGAAAAACGAC
CAAGATACGACAGTGGCAAAATACCAAGAATACCAAGCTAAGGCCACAGCACTTTACGCTAAATACAGCGAAGTATTTGC
TTTTTACGAACCAGAATTGATGCAATTATCAGCTGAAGATTTTGCGGCATTTGTTGCTGAAACGCCAGTGTTGTCAGCTT
ATGCGCATTTCTTTGAACAACTTTTCAAACGCCAAGCACACGTCTTGTCACAAAAAGAAGAGGAGCTCTTAGCTGGTGCA
CATGAAATCTTTGGTGCTGCTGGTGAAACTTTTGAAATTCTAGATAATGCCGATATTGTTTTCCCAGTGGTTTTAGATGA
TGAAGGCAATGAAGTGCAACTAACACATGGTAATTTCATTAGTCTTTTGGAATCAAAAAATCGCGACGTCCGAAAAGCAG
CTTATGAAGCGATGTATGCCACTTACGAACAATTCCAGCATACTTACGCTAAGACATTGCAGACAAATGTTAAGGTTCAT
AACTACGATGCGCGTGTTCACCACTTTAAGTCAGCACGTGAGGCAGCACTTTCTGCTAACTTCATTCCAGAAGCAGTTTA
TGATACATTGATTGACCGCGTGAATGCCCACTTGCCATTGCTTCATCGTTATGTGGAACTTCGTAAAAAAGTTCTTAAAT
TAGATGATTTGAAAATGTATGATATCCATACACCATTGTCTGAAATGGATATGAGCTTCACTTATGAAGAAGCTTTGAAA
AAAGCAGAAGAAGTTTTGGCTGTCTTTGGTAAAGATTATTCTGAGCGTGTTCATCGTGCTTTCACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGAAAACGCTCAGGAGCTTATTCTGGTGGGGCTTACGATACTAATGCCTTTATGCTTTTGAACT
GGCAAGACACCCTTGATAATCTGTTTACTTTGGTACACGAAACAGGTCACAGTCTTCATTCAACATTTACACGTGAAAAC
CAACCATATGTGTACGGTGATTACAGTATTTTCTTAGCTGAGATTGCTTCAACAACTAATGAAAATATTTTGACAGAAAC
ACTTCTAAAAGAAGTAGATGATGACAAGGCTCGCTTTGCAATCTTGAATCATTACTTAGATGGTTTCAAAGGGACTATTT
TCCGTCAAGCGCAGTTTGCTGAATTCGAAGATATGATTCATAAAGCAGATCAAGCTGGTGAAGTCTTGACTAGCGAATAT
CTTAATAATCTTTATGCAGACCTAAATGAAAAATATTATGGTCTTAGCAAGGAAGACAATCCAGAAATTCAATACGAATG
GGCACGTATTCCGCATTTCTACTACAATTATTATGTCTATCAATACTCTACAGGATTTGCAGCGGCAAGTTATCTAGCTG
ATAAAGTGGTTCACGGTACTCAGGCTGATATTGATCGATATCTTGATTATCTTAAAGCAGGAAATTCTGATTATCCGCTA
AATGTCATTGCTAAAGCAGGTGTGGATATGACAAGCAGTGATTATCTGGATGCTGCCTTCAAGATTTTTGAAGACCGTCT
AAATGAATTGGAAGCTTTGGTCGAAAAAGGAGCACACCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72

100

0.72