Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   KRG72_RS02805 Genome accession   NZ_CP076703
Coordinates   529166..531451 (-) Length   761 a.a.
NCBI ID   WP_074563274.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 524166..536451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS02785 (KRG72_02785) - 524177..524935 (+) 759 WP_074559481.1 DivIVA domain-containing protein -
  KRG72_RS02790 (KRG72_02790) ileS 525259..528057 (+) 2799 WP_258255788.1 isoleucine--tRNA ligase -
  KRG72_RS02795 (KRG72_02795) - 528145..528447 (-) 303 WP_020916381.1 DUF1827 family protein -
  KRG72_RS02800 (KRG72_02800) - 528519..528965 (-) 447 WP_258255789.1 NUDIX hydrolase -
  KRG72_RS02805 (KRG72_02805) clpE 529166..531451 (-) 2286 WP_074563274.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  KRG72_RS02810 (KRG72_02810) - 531592..532125 (-) 534 WP_133018050.1 DUF3278 domain-containing protein -
  KRG72_RS02815 (KRG72_02815) - 532155..532352 (-) 198 WP_006531540.1 helix-turn-helix transcriptional regulator -
  KRG72_RS02820 (KRG72_02820) argF 532527..533507 (+) 981 WP_258255792.1 ornithine carbamoyltransferase -
  KRG72_RS02825 (KRG72_02825) - 533624..533854 (+) 231 WP_004230761.1 DUF1797 family protein -
  KRG72_RS02830 (KRG72_02830) - 534165..534851 (+) 687 WP_020916387.1 amino acid ABC transporter permease -
  KRG72_RS02835 (KRG72_02835) - 534851..535585 (+) 735 WP_074559489.1 amino acid ABC transporter ATP-binding protein -
  KRG72_RS02840 (KRG72_02840) - 535954..536430 (+) 477 WP_204983553.1 ferrous iron transport protein A -

Sequence


Protein


Download         Length: 761 a.a.        Molecular weight: 84508.51 Da        Isoelectric Point: 4.9828

>NTDB_id=577454 KRG72_RS02805 WP_074563274.1 529166..531451(-) (clpE) [Streptococcus equinus strain S1]
MLCQNCHLNESTIHLYTNVNGQQKQIDLCQNCYQIMKTDPNNAILGGLGGNPQSSSNQTNQSSNPFDDFFSNLSGFPAFG
SQGFQNTPPTQSGGGNNNGRGGNGNNNFRPNGPAQQEPKGLLEEFGINVTDIARRGDIDPVIGRDAEIVRVIEILNRRTK
NNPVLIGEPGVGKTAVVEGLAQKIVDGNVPQKLQNKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRERKDVILFIDEI
HEIVGAGNAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILRGIQKKYEDY
HHVKYSDDAIEAAATLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDKRLVQAENLKTQATREEDYERAAYFR
DQIAKYKEMQKQTINEDDIPVITEKTIEAIVEEKTNIPVGDLKEKEQSQLIHLADDLKEHVIGQDEAVDKIAKAIRRNRV
GLGTPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRN
PYSLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKSEASVGFGAAREGRTNSVLGQLGDF
FSPEFMNRFDGIIEFKALSKDNLLHIVNLMLDDVNNRLATNDIHLEVTDKVKEKLVDLGYDPKMGARPLRRTIQDHIEDA
ITDFYLEHPTEKDLKAVMTSNGKIIIKSAKKVEKEETVSAE

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=577454 KRG72_RS02805 WP_074563274.1 529166..531451(-) (clpE) [Streptococcus equinus strain S1]
ATGCTCTGTCAAAATTGTCATTTAAATGAATCTACTATTCACCTGTATACAAATGTCAATGGTCAGCAAAAGCAAATTGA
TTTGTGTCAAAATTGCTATCAAATTATGAAAACTGACCCAAATAACGCTATTTTAGGAGGATTAGGAGGTAATCCTCAAT
CATCTTCTAACCAAACAAACCAATCATCGAATCCTTTCGACGATTTCTTTAGTAATCTCAGCGGCTTCCCAGCATTTGGA
AGCCAAGGATTCCAAAATACTCCTCCAACTCAATCTGGTGGAGGCAATAATAACGGACGCGGTGGCAATGGCAACAACAA
TTTCCGCCCAAACGGACCAGCACAGCAAGAACCTAAGGGCTTGCTAGAAGAATTTGGTATCAACGTTACTGATATCGCAC
GTCGTGGTGATATCGACCCTGTCATCGGACGTGATGCTGAAATTGTTCGTGTTATCGAAATTCTTAACCGCCGTACAAAA
AACAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACTGCCGTTGTTGAAGGATTAGCCCAAAAAATTGTAGACGG
TAACGTTCCACAAAAACTCCAAAATAAACAAGTTATCCGCCTAGACGTGGTAAGCCTTGTTCAAGGAACTGGTATTCGTG
GTCAATTTGAAGAACGTATGCAAAAACTCATGGAAGAAATCCGTGAACGTAAAGATGTTATCCTCTTCATCGATGAAATC
CACGAAATTGTCGGCGCTGGTAATGCTGGTGACGGTAACATGGATGCTGGTAACATCTTGAAACCCGCTCTTGCTCGTGG
CGAGCTACAATTAGTTGGTGCAACTACTTTGAACGAATACCGTATCATCGAAAAAGATGCTGCGCTTGAACGTCGTATGC
AACCTGTAAAAGTTGACGAACCAAGCGTCGAAGAAACTATCACTATTCTTCGTGGTATTCAAAAGAAATACGAAGATTAT
CACCATGTCAAATACAGTGATGATGCTATCGAAGCTGCTGCTACCCTCTCAAATCGCTACATTCAAGACCGTTTCCTTCC
AGATAAAGCTATCGACCTTCTCGACGAAGCTGGTTCTAAGATGAACTTGACACTCAACTTTGTTGATCCAAAAGAAATTG
ACAAACGTTTGGTTCAAGCCGAAAACCTAAAAACTCAAGCTACTCGTGAAGAAGATTATGAACGCGCAGCATATTTCCGT
GATCAAATCGCTAAATACAAGGAAATGCAAAAACAAACCATCAACGAAGATGATATTCCAGTGATTACTGAGAAAACTAT
CGAAGCAATCGTTGAAGAAAAAACAAACATCCCTGTTGGTGACTTAAAAGAAAAAGAACAATCACAATTAATTCACCTTG
CTGATGACTTGAAAGAACACGTTATTGGTCAAGATGAAGCCGTTGATAAGATTGCCAAAGCTATCCGTCGTAACCGTGTT
GGTCTTGGTACACCAAACCGTCCAATTGGTTCATTCCTCTTTGTCGGTCCTACTGGTGTTGGTAAAACTGAACTTTCAAA
ACAACTCGCTATTGAACTCTTCGGTTCAGCTGATAGCATGATTCGCTTTGACATGTCTGAATACATGGAAAAACACGCCG
TCGCTAAACTCGTCGGAGCCCCTCCAGGATATGTTGGTTACGAAGAAGCTGGTCAATTAACTGAAAAAGTTCGTCGAAAT
CCATACTCACTCATCTTGCTTGATGAAGTTGAAAAAGCACACCCTGATGTCATGCACATGTTCTTGCAAGTTCTTGACGA
TGGGCGTTTAACTGACGGTCAAGGACGCACTGTAAGCTTTAAAGATACAATTATCATCATGACATCCAACGCTGGTACTG
GCAAATCTGAAGCTTCTGTTGGTTTCGGTGCTGCTCGTGAAGGACGTACAAATTCTGTTCTTGGTCAACTTGGAGACTTC
TTCAGCCCTGAATTCATGAACCGTTTTGACGGCATTATCGAATTCAAAGCTCTAAGCAAAGATAATCTCCTTCATATCGT
TAACCTCATGCTTGACGATGTTAACAACCGTTTGGCAACTAACGATATTCACCTTGAAGTAACAGATAAAGTTAAAGAAA
AACTAGTTGACCTTGGATATGATCCTAAGATGGGCGCTCGTCCACTTCGTCGAACTATCCAAGATCACATTGAAGATGCT
ATTACAGACTTCTACCTTGAACACCCAACTGAAAAAGATTTAAAAGCTGTGATGACAAGCAATGGTAAAATCATCATCAA
ATCAGCTAAAAAAGTTGAAAAAGAAGAAACTGTTTCAGCAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

85.279

99.08

0.845

  clpE Streptococcus pneumoniae Rx1

83.4

98.949

0.825

  clpE Streptococcus pneumoniae D39

83.4

98.949

0.825

  clpE Streptococcus pneumoniae R6

83.4

98.949

0.825

  clpE Streptococcus pneumoniae TIGR4

83.4

98.949

0.825

  clpC Lactococcus lactis subsp. cremoris KW2

77.135

100

0.771

  clpC Bacillus subtilis subsp. subtilis str. 168

51.108

88.962

0.455

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.402

83.443

0.396

  clpC Streptococcus pneumoniae Rx1

46.741

82.654

0.386

  clpC Streptococcus pneumoniae D39

46.741

82.654

0.386

  clpC Streptococcus pneumoniae TIGR4

46.582

82.654

0.385

  clpC Streptococcus mutans UA159

47.021

81.603

0.384

  clpC Streptococcus thermophilus LMD-9

45.298

83.837

0.38

  clpC Streptococcus thermophilus LMG 18311

44.984

83.837

0.377