Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CCX78_RS04275 Genome accession   NZ_AP017931
Coordinates   817957..819696 (+) Length   579 a.a.
NCBI ID   WP_056946696.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 812957..824696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS04245 (LASAK_00843) tenA 813028..813711 (+) 684 WP_096584868.1 thiaminase II -
  CCX78_RS04250 (LASAK_00844) thiW 813704..814210 (+) 507 WP_011374794.1 energy coupling factor transporter S component ThiW -
  CCX78_RS04255 (LASAK_00845) - 814242..815204 (-) 963 WP_096584871.1 diacylglycerol/lipid kinase family protein -
  CCX78_RS04260 (LASAK_00846) rnjA 815342..817030 (-) 1689 WP_011374792.1 ribonuclease J1 -
  CCX78_RS04265 (LASAK_00847) - 817035..817247 (-) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  CCX78_RS04270 (LASAK_00848) - 817444..817929 (+) 486 WP_011374790.1 hypothetical protein -
  CCX78_RS04275 (LASAK_00849) rcrP 817957..819696 (+) 1740 WP_056946696.1 ABC transporter ATP-binding protein Regulator
  CCX78_RS04280 (LASAK_00850) rcrQ 819683..821446 (+) 1764 WP_056946693.1 ABC transporter ATP-binding protein Regulator
  CCX78_RS04285 (LASAK_00851) def 821495..822052 (-) 558 WP_011374787.1 peptide deformylase -
  CCX78_RS04290 (LASAK_00852) - 822554..823237 (+) 684 WP_096584874.1 hypothetical protein -
  CCX78_RS04295 (LASAK_00853) pdhA 823560..824669 (+) 1110 WP_056946690.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64667.15 Da        Isoelectric Point: 9.1434

>NTDB_id=57745 CCX78_RS04275 WP_056946696.1 817957..819696(+) (rcrP) [Latilactobacillus sakei strain LK-145]
MKLMWRYTIRYKKLLFWNFICVFGFILIELGLPTLLGQIIDKGINRHTVGPVWQYGTLMVVISLIGLVGLIGLAYTGSRL
TTNLTRDIRNDIFKKTMQFSHHEYGEFGVSSLITRTTNDAFQVTQFMVQVLRTGFMTPMMIVASAFMIVRTSLSLSWIVF
AAIPILLVGVVIIGWLSEPMSAEQQKNLDAINLNLRENLTGIRVIRAFVREKFQSMRFRKVNEAYSQSSIKLFTLVALAQ
PGFSFIFNIVFVLIIWQGAVQINTGHLAVGTLIAFIEYIFHVLFSFMLFASVFMMYPRAAVSAERIEKVLNSPVDITDDD
QGIQTTTTQGELAFENVSFAYPGPTESPVIRDVSFKAHPGETVAFIGSTGSGKSTLIQLIPRFFDVTRGQVMIDGYDVRD
YQLKALRQKIGFIPQKAVLFTGTIADNLRYGNPEATDAELWDALTIAQSKTFVAEKPEGLQTYLAEGGNNLSGGQKQRLA
IARAIVRRPDIYVFDDSFSALDYQTDAALRGALKSITKDATVLIVAQRVGTIMNADRIVVLNEGQVVGIGTHKELLKTNE
VYRAIAASQLSKEELNEEY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=57745 CCX78_RS04275 WP_056946696.1 817957..819696(+) (rcrP) [Latilactobacillus sakei strain LK-145]
ATGAAATTAATGTGGCGCTATACCATTCGCTATAAAAAACTACTATTTTGGAATTTTATTTGCGTATTTGGGTTTATTTT
AATTGAACTAGGATTACCAACTTTATTAGGACAAATTATTGATAAAGGTATCAACCGCCATACGGTCGGGCCGGTTTGGC
AATATGGGACTTTAATGGTTGTTATTTCCTTAATTGGCTTGGTGGGGTTAATTGGCCTAGCCTACACGGGGAGTCGCTTA
ACCACTAATTTAACACGTGATATCCGGAACGATATTTTTAAAAAGACGATGCAATTTTCACATCATGAATATGGTGAATT
TGGCGTGTCTTCCTTAATTACTCGGACGACCAACGATGCGTTTCAAGTGACGCAATTCATGGTGCAAGTGTTACGAACTG
GGTTTATGACCCCGATGATGATCGTTGCCAGTGCGTTTATGATTGTGCGGACGAGTCTGTCGTTATCATGGATTGTTTTT
GCAGCCATTCCGATTTTATTAGTTGGGGTGGTCATCATTGGTTGGTTATCCGAACCAATGTCTGCAGAACAACAAAAAAA
CTTAGATGCAATCAATTTAAACTTACGTGAAAATTTAACTGGGATTCGTGTTATTCGCGCATTTGTGCGTGAAAAATTCC
AGAGTATGCGTTTTAGAAAAGTTAATGAAGCCTACAGTCAGAGTTCAATCAAACTCTTTACATTAGTAGCCCTCGCACAA
CCTGGCTTTTCATTTATCTTCAATATTGTGTTCGTGTTAATCATTTGGCAAGGGGCGGTTCAAATTAACACGGGTCACTT
GGCAGTGGGGACGTTAATTGCCTTTATTGAATACATTTTCCACGTACTATTTTCATTCATGCTCTTCGCAAGTGTCTTCA
TGATGTACCCTAGAGCGGCTGTTTCAGCAGAACGGATTGAAAAAGTCCTTAATTCACCCGTAGATATTACGGATGATGAT
CAGGGGATTCAAACCACGACTACCCAAGGCGAATTGGCTTTTGAAAATGTGTCGTTTGCTTATCCTGGTCCGACAGAAAG
TCCGGTCATTCGGGATGTCAGTTTTAAAGCCCATCCAGGGGAAACCGTCGCCTTCATCGGTAGTACGGGGAGTGGTAAAT
CAACCTTAATCCAATTGATTCCACGCTTTTTCGATGTGACACGGGGTCAAGTGATGATTGATGGTTACGATGTTCGTGAT
TATCAATTGAAAGCATTACGCCAAAAAATTGGTTTTATTCCTCAAAAAGCAGTCCTCTTTACCGGCACGATTGCGGATAA
CTTGCGCTATGGTAATCCGGAAGCAACGGATGCTGAATTATGGGATGCTTTAACGATTGCCCAATCCAAAACATTTGTGG
CGGAAAAACCAGAGGGACTCCAAACGTATTTGGCCGAAGGGGGCAACAACTTATCAGGTGGGCAAAAGCAACGGCTAGCG
ATTGCCAGAGCAATTGTTCGTCGGCCAGACATTTACGTCTTTGACGATAGCTTCTCAGCTTTGGATTATCAAACTGATGC
GGCTTTACGGGGCGCTTTAAAATCGATTACGAAAGATGCGACGGTCTTAATTGTCGCCCAACGTGTAGGGACGATTATGA
ATGCGGATCGAATTGTCGTCTTAAATGAAGGCCAAGTTGTGGGCATCGGGACCCACAAGGAATTACTTAAAACAAATGAG
GTTTATCGGGCCATTGCCGCCTCACAGTTATCAAAGGAGGAGCTCAATGAAGAATATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-283)

ABC transporter (ABC_tran)

(351-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.646

100

0.413

Multiple sequence alignment