Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CCX78_RS04280 Genome accession   NZ_AP017931
Coordinates   819683..821446 (+) Length   587 a.a.
NCBI ID   WP_056946693.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 814683..826446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS04260 (LASAK_00846) rnjA 815342..817030 (-) 1689 WP_011374792.1 ribonuclease J1 -
  CCX78_RS04265 (LASAK_00847) - 817035..817247 (-) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  CCX78_RS04270 (LASAK_00848) - 817444..817929 (+) 486 WP_011374790.1 hypothetical protein -
  CCX78_RS04275 (LASAK_00849) rcrP 817957..819696 (+) 1740 WP_056946696.1 ABC transporter ATP-binding protein Regulator
  CCX78_RS04280 (LASAK_00850) rcrQ 819683..821446 (+) 1764 WP_056946693.1 ABC transporter ATP-binding protein Regulator
  CCX78_RS04285 (LASAK_00851) def 821495..822052 (-) 558 WP_011374787.1 peptide deformylase -
  CCX78_RS04290 (LASAK_00852) - 822554..823237 (+) 684 WP_096584874.1 hypothetical protein -
  CCX78_RS04295 (LASAK_00853) pdhA 823560..824669 (+) 1110 WP_056946690.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  CCX78_RS04300 (LASAK_00854) - 824671..825648 (+) 978 WP_041820853.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65100.65 Da        Isoelectric Point: 6.2494

>NTDB_id=57746 CCX78_RS04280 WP_056946693.1 819683..821446(+) (rcrQ) [Latilactobacillus sakei strain LK-145]
MKNIKVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVVMM
LTINLWMALLSLIMIPTSLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEERAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPADVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMTIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAEAKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=57746 CCX78_RS04280 WP_056946693.1 819683..821446(+) (rcrQ) [Latilactobacillus sakei strain LK-145]
ATGAAGAATATTAAGGTGCTCAAACGCCTGATGCGCTATATTGGGCCGTATAAAATAACGTTCTGGTCAGCAATTACTGC
AACGGTGATTTCCGTTTTAGCGAATGCGCTATGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGTTACATTACTAAAGTGATTGCGATGATTCTCAGCTTTGCATTACTTTATCAAACG
ATGATGTTTCTGGGATCGTTTTTAATGACGCGTGCCGTCCAACACGCAATGCGTGATTTACGGCGGGATATCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGCAATATCTTGTCGCGGGTTACTAATGATGTTGATG
CAATTACCAATGCCTTGCAACAGAGTTTAATCCAAGTGGTGACCTCAATTTTGGGGATCATCATGGCGGTTGTCATGATG
TTGACGATTAATTTATGGATGGCATTACTATCCTTAATTATGATTCCGACCTCACTTTTGATTTCTAAAGCAATCATCAA
AAAGTCACAAGTTTACTTCCAAGGGCAACAAAATACCTTGGGTGAGATGAACGGCTATGTTCAAGAAAACTATGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGAACGAGCAGTTGATGAATTTGCAGCGATTACGGATCGATTGACTGAATTT
GGCTTCAAAGCGGCCTTTATTTCAGGGATTATGATGCCATTAGTGGGTTTGACGACTAACTTGACTTACGCTGGGATGGC
AACCTTGGGTGGTTACTATGTCTTGCACGGTGTCATTACGGTTGGTAACTTGCAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCGATTTCGCAAATCACACAATTATCCGGTGTGATGCAAGCCGCTGCCGCTGCGACACAACGAGTTTTTGAA
ATCTTAGATGAACCGATTGAACCAACTGATCAAGAAACGGCTGAATTACCGGCTGATGTTCAGGGGAAAGTTGAATTTAA
AGATGTCAGCTTTAGCTATGATCCAGCCAAACCGTTGATTCGTGATTTAAGTTTCACTGCTAATCCGGGCGATAAAATTG
CGATTGTTGGGCCAACTGGGGCCGGGAAAACGACGATGATTAATTTATTAATGCGTTTTTACGATGTCAGTTCTGGTCAA
ATCCTGATTGATGGCGTCGATACCCGCCAATTGAGTAAACAGACAGTTCGCTCACTCTTTGGGATGGTGCTGCAGGATGC
TTGGTTGTACCACACAACGATTACGGAAAATATTCGTTTTGGGAAGCTAGATGCCACTGAATATGAAGTCGTGGATGCTG
CCAAAACGGCTAATGTTGATCACTTTATCCATACATTGCCAAATGGCTATCAGATGACAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGACAAAAGCAACTCTTAACGATTGCTCGGGCAGTGATTGCTAATCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCAGTCGATACGCGCTTAGAAAGCTTATTACAAAAGGCGATGGAAAAAGTGATGCAAGGACGAACAAGCTTTG
TGATTGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTGATGGATCACGGTCAAATTGTTGAAAAAGGA
ACGCATGATGACTTATTAGCCGCTAATGGTGTTTATGCTAAGCTTTATAACAGTCAATTTGCAGAAGCAAAATTAAATGC
ATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-297)

ABC transporter (ABC_tran)

(361-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.857

100

0.429

Multiple sequence alignment