Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CCX78_RS03990 Genome accession   NZ_AP017931
Coordinates   767359..769236 (+) Length   625 a.a.
NCBI ID   WP_096584798.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 762359..774236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS03960 (LASAK_00785) - 762434..762754 (-) 321 WP_011374852.1 hypothetical protein -
  CCX78_RS03965 (LASAK_00786) - 762775..763431 (-) 657 WP_011374851.1 type II CAAX endopeptidase family protein -
  CCX78_RS03970 (LASAK_00787) - 763633..763833 (+) 201 WP_004270328.1 cold-shock protein -
  CCX78_RS03975 (LASAK_00788) - 764031..764759 (-) 729 WP_011374850.1 ion transporter -
  CCX78_RS03980 (LASAK_00789) - 764964..765605 (+) 642 WP_016265275.1 TetR family transcriptional regulator -
  CCX78_RS03985 (LASAK_00790) rcrP 765629..767359 (+) 1731 WP_096584795.1 ABC transporter ATP-binding protein Regulator
  CCX78_RS03990 (LASAK_00791) rcrQ 767359..769236 (+) 1878 WP_096584798.1 ABC transporter ATP-binding protein Regulator
  CCX78_RS03995 (LASAK_00792) - 769334..770344 (+) 1011 WP_096584801.1 serine hydrolase domain-containing protein -
  CCX78_RS04000 (LASAK_00793) manA 770446..771420 (+) 975 WP_056947876.1 mannose-6-phosphate isomerase, class I -
  CCX78_RS04005 (LASAK_00794) - 771494..772138 (+) 645 WP_096584804.1 HD domain-containing protein -
  CCX78_RS04010 (LASAK_00795) - 772189..772434 (-) 246 WP_011374843.1 hypothetical protein -
  CCX78_RS04015 (LASAK_00796) - 772556..773353 (-) 798 WP_056947872.1 pyruvate, water dikinase regulatory protein -
  CCX78_RS04020 (LASAK_00797) - 773373..773996 (-) 624 WP_056947870.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 69711.15 Da        Isoelectric Point: 5.2517

>NTDB_id=57743 CCX78_RS03990 WP_096584798.1 767359..769236(+) (rcrQ) [Latilactobacillus sakei strain LK-145]
MAEKAATNRPQGGHGPGRGMGGVVEKPKNFWGTTNRLLKYMSSRLIALVFVIVLAIVSVIFQIRTPKVLGEATTEIFKGV
MKGNAMQKAGIAMDRLPIDFDKIQHIIMTVILMYLASAVFSFLQQFIMTRISQQTVYELRKELKDKMQRVPINYYDTHSN
GDIMSRAINDMDNIASTLQQSLTQMVTSTVTFIGVLWMMLTISWQLTLIALVTIPLSLIVVGIVAPKSQKFFAAQQKSLG
LLNNQIEENFSGQVVLKTFNREQVTIDTFEEQNEKLYKAAWKAQFISGVIMPLMTFVNNLGYVFVAIIGGIRVSHGQVTL
GDMQAFMQYTQQFSQPISQLANLANTIQSTIASAERVFAVLDEEDMSEEPSTVPVVQDDANQLEMEHVEFGYQGKDLLLT
DYNLQVKPGQMIAIVGPTGAGKTTIINLLERFYDVSGGSIKLKGVDTRDMSREELRSHFAMVLQDTWLFTGTIWDNLKYG
NESVSDEAILAAAKAAHVDGFVRQLPEGYNTVLNEEASNISQGQRQLLTIARAFVADPEILILDEATSSVDTRTEIHIQH
AMERLLQNRTSFVVAHRLSTIRDADNIIVMNHGSIMETGTHDELMVQDGFYADLYNSQFSGNVEI

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=57743 CCX78_RS03990 WP_096584798.1 767359..769236(+) (rcrQ) [Latilactobacillus sakei strain LK-145]
ATGGCAGAAAAAGCAGCAACAAACCGGCCACAAGGTGGTCACGGTCCAGGTCGCGGCATGGGTGGCGTCGTTGAAAAGCC
TAAGAATTTCTGGGGCACAACTAATCGTTTATTGAAATACATGTCGAGCCGTTTAATTGCCTTAGTATTTGTCATTGTTT
TGGCGATTGTCTCCGTTATTTTCCAAATTAGAACGCCCAAAGTTTTAGGGGAAGCAACAACTGAAATCTTTAAAGGGGTG
ATGAAAGGCAATGCCATGCAAAAAGCTGGGATTGCAATGGATCGCTTACCAATTGATTTCGATAAGATTCAACACATTAT
CATGACGGTGATCTTGATGTATCTTGCTTCAGCCGTCTTCAGTTTCTTACAACAATTTATCATGACGCGGATTTCACAAC
AAACCGTCTATGAATTGCGTAAGGAATTGAAAGATAAGATGCAACGAGTGCCAATCAATTATTACGATACCCATTCAAAC
GGGGATATCATGAGTCGTGCGATTAATGATATGGATAATATTGCCAGCACGCTACAACAAAGTTTAACGCAAATGGTGAC
CAGCACGGTAACGTTTATCGGTGTTTTATGGATGATGCTGACGATCAGTTGGCAATTAACACTTATCGCTTTGGTCACAA
TTCCGTTGAGTTTAATTGTCGTTGGGATTGTCGCACCTAAGTCGCAAAAATTCTTTGCTGCACAACAAAAGAGTTTAGGC
TTATTAAATAATCAAATCGAAGAAAACTTTTCGGGTCAAGTGGTCTTGAAGACCTTTAACCGGGAACAAGTGACGATTGA
TACATTTGAAGAACAAAATGAAAAGTTGTATAAAGCTGCTTGGAAAGCCCAATTTATCTCTGGTGTGATCATGCCATTGA
TGACTTTCGTCAATAACTTAGGGTACGTCTTCGTTGCGATTATCGGTGGGATTCGCGTCTCACACGGTCAAGTCACATTA
GGGGACATGCAAGCTTTCATGCAATATACACAACAATTCTCACAACCAATCTCACAATTGGCTAACTTGGCAAACACAAT
TCAATCAACGATTGCTTCAGCTGAACGGGTTTTTGCTGTTTTAGATGAAGAAGATATGTCTGAAGAACCTTCAACTGTCC
CAGTTGTGCAAGATGATGCCAACCAATTAGAAATGGAACATGTTGAATTTGGTTACCAAGGCAAGGATCTTTTATTGACG
GACTATAATTTACAAGTTAAACCGGGCCAAATGATCGCGATTGTTGGTCCTACCGGGGCTGGTAAGACAACTATTATTAA
TTTACTTGAACGTTTCTACGATGTTAGTGGCGGTTCGATTAAATTAAAAGGTGTCGATACACGTGATATGAGTCGGGAAG
AATTGCGGAGTCATTTTGCGATGGTTCTTCAAGATACTTGGCTATTCACCGGGACGATTTGGGATAACTTGAAGTACGGT
AATGAATCAGTTTCAGACGAAGCGATTTTGGCAGCTGCTAAAGCAGCCCATGTTGATGGCTTTGTTCGTCAATTACCTGA
AGGTTATAACACAGTCTTGAATGAAGAAGCTTCAAATATTTCACAAGGTCAACGGCAATTATTGACGATTGCCCGGGCCT
TTGTGGCCGATCCAGAAATCTTAATCTTGGATGAAGCAACCAGTTCTGTTGATACGCGGACTGAAATTCATATCCAACAC
GCAATGGAACGTTTATTGCAAAATCGAACGAGTTTCGTTGTTGCCCATCGTTTATCAACGATTCGGGATGCGGATAATAT
CATTGTGATGAATCACGGTTCAATTATGGAAACCGGCACACATGATGAATTGATGGTTCAAGACGGCTTTTACGCTGATC
TATATAACAGCCAATTCTCAGGGAACGTCGAGATTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-336)

ABC transporter (ABC_tran)

(399-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.464

92.48

0.411

Multiple sequence alignment