Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CCX78_RS03985 Genome accession   NZ_AP017931
Coordinates   765629..767359 (+) Length   576 a.a.
NCBI ID   WP_096584795.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 760629..772359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS03945 (LASAK_00782) mgsA 761061..761483 (+) 423 WP_011374855.1 methylglyoxal synthase -
  CCX78_RS03950 (LASAK_00783) - 761567..762262 (+) 696 WP_011374854.1 YoaK family protein -
  CCX78_RS03955 (LASAK_00784) - 762259..762441 (-) 183 WP_011374853.1 hypothetical protein -
  CCX78_RS03960 (LASAK_00785) - 762434..762754 (-) 321 WP_011374852.1 hypothetical protein -
  CCX78_RS03965 (LASAK_00786) - 762775..763431 (-) 657 WP_011374851.1 type II CAAX endopeptidase family protein -
  CCX78_RS03970 (LASAK_00787) - 763633..763833 (+) 201 WP_004270328.1 cold-shock protein -
  CCX78_RS03975 (LASAK_00788) - 764031..764759 (-) 729 WP_011374850.1 ion transporter -
  CCX78_RS03980 (LASAK_00789) - 764964..765605 (+) 642 WP_016265275.1 TetR family transcriptional regulator -
  CCX78_RS03985 (LASAK_00790) rcrP 765629..767359 (+) 1731 WP_096584795.1 ABC transporter ATP-binding protein Regulator
  CCX78_RS03990 (LASAK_00791) rcrQ 767359..769236 (+) 1878 WP_096584798.1 ABC transporter ATP-binding protein Regulator
  CCX78_RS03995 (LASAK_00792) - 769334..770344 (+) 1011 WP_096584801.1 serine hydrolase domain-containing protein -
  CCX78_RS04000 (LASAK_00793) manA 770446..771420 (+) 975 WP_056947876.1 mannose-6-phosphate isomerase, class I -
  CCX78_RS04005 (LASAK_00794) - 771494..772138 (+) 645 WP_096584804.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63736.86 Da        Isoelectric Point: 6.4076

>NTDB_id=57742 CCX78_RS03985 WP_096584795.1 765629..767359(+) (rcrP) [Latilactobacillus sakei strain LK-145]
MIKLAKKRMSGLAVFGAVLFMVIQVVSNLYLPNLTSDIVNNGIAKGDIDYIWQAGFKMLGFSLISILAAICNVYLAAKTS
QGLGQKLRSDIYRKVINFSHDEMDQVGTSSLITRTTNDVVQIQNVAMMFLRMMIMAPIMLIGASFLAYQKNAQLTSIFVV
VLPLMAIFIGIVMYFAVPLFKAMQKKTDRINLVFREGLTGVRVIRAFRRDKFEQERFDDANLDYTQNAKKVYSIMSVVLP
VMTLIMSGTNIAITWMGGHLIADQAMQVGNLLAFMTYAMQILMSFMMLSMVFVFIPRAQASAVRINEVLDLQTPIENPEN
PKSFTDQTVSLAFDNVNFRYQNAEKLALEKIDFQASAGQTVAIIGGTGSGKSTLVNLIPRFYDVEAGQVQVDGLNVKDVT
LHDIHEQVAFVPQKANLFTGTIRENMQYGNPDATDDQIWHALEIAQSKDFVSELDGGLDSHVEQGGGNFSGGQRQRLAIA
RALVKRASVYVFDDSFSALDFKTDALLRKALKEDTEIQKSVVVIVGQRVSTVADADTILVLDEGQMVGKGTHAQLKATNA
TYQEIINSQIREGDEA

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=57742 CCX78_RS03985 WP_096584795.1 765629..767359(+) (rcrP) [Latilactobacillus sakei strain LK-145]
ATGATTAAACTTGCAAAAAAGAGAATGTCGGGCTTAGCCGTTTTCGGTGCTGTCTTATTCATGGTGATTCAAGTTGTCAG
TAACTTGTATCTCCCTAATTTGACGTCTGATATTGTCAATAACGGGATTGCCAAAGGTGATATTGATTATATCTGGCAAG
CCGGCTTTAAAATGCTCGGCTTTTCATTGATCAGTATCCTAGCCGCAATCTGTAACGTTTATTTAGCCGCTAAGACATCA
CAAGGTCTGGGCCAAAAATTACGATCAGATATTTATCGAAAGGTCATCAATTTCTCACACGATGAAATGGACCAAGTGGG
GACCTCTTCACTGATTACACGGACGACCAATGATGTTGTTCAAATTCAAAATGTGGCAATGATGTTTTTACGAATGATGA
TCATGGCCCCTATTATGTTGATTGGTGCCAGCTTCTTGGCTTACCAAAAGAACGCGCAATTAACATCAATCTTCGTCGTT
GTCTTACCATTGATGGCAATCTTTATCGGTATCGTGATGTACTTTGCCGTACCGCTTTTCAAAGCGATGCAAAAGAAGAC
TGACCGGATTAACTTAGTTTTCCGTGAAGGCTTAACGGGGGTGCGGGTAATCCGTGCATTCCGTCGCGATAAGTTCGAAC
AAGAACGTTTTGACGATGCGAACTTAGATTACACACAAAATGCTAAAAAGGTCTACAGTATCATGTCTGTCGTGTTACCT
GTGATGACATTGATTATGAGTGGGACAAATATTGCAATCACTTGGATGGGTGGTCACTTAATTGCTGATCAAGCCATGCA
AGTGGGGAACTTATTAGCCTTCATGACTTATGCCATGCAAATCTTAATGAGTTTCATGATGCTTTCAATGGTTTTTGTCT
TCATTCCACGGGCACAAGCATCAGCCGTTCGGATTAATGAAGTCTTAGATTTACAAACACCAATTGAAAATCCAGAAAAC
CCAAAAAGTTTTACAGATCAAACTGTCAGCTTGGCCTTCGATAATGTTAACTTCCGCTACCAAAATGCAGAAAAATTAGC
CTTAGAGAAGATTGATTTCCAAGCATCTGCTGGTCAAACCGTTGCGATTATCGGGGGGACTGGTTCAGGTAAATCAACCT
TGGTTAACTTGATTCCTCGTTTTTACGACGTTGAAGCTGGCCAAGTCCAAGTTGATGGGTTAAATGTCAAAGATGTGACA
TTGCATGATATTCATGAACAAGTCGCATTTGTACCGCAAAAAGCCAATCTCTTTACAGGGACGATTCGCGAAAATATGCA
ATATGGGAATCCGGATGCAACTGATGATCAGATTTGGCATGCACTTGAAATTGCCCAATCAAAGGATTTCGTTAGCGAAC
TTGATGGTGGCTTAGACAGTCACGTTGAACAAGGTGGCGGTAACTTCTCAGGTGGTCAACGTCAACGATTAGCGATTGCC
CGGGCATTAGTTAAACGCGCATCAGTTTATGTCTTTGATGATTCATTTTCAGCTTTAGATTTCAAGACGGATGCCCTTTT
ACGCAAAGCCTTGAAGGAAGATACTGAAATTCAAAAGAGTGTCGTCGTCATTGTTGGACAACGGGTCTCAACTGTGGCTG
ATGCCGATACAATCTTGGTCTTAGATGAAGGCCAAATGGTTGGTAAAGGCACGCATGCCCAATTAAAGGCAACAAATGCA
ACTTACCAAGAAATTATCAATTCACAAATCAGAGAGGGGGATGAAGCCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(15-285)

ABC transporter (ABC_tran)

(348-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.021

97.917

0.411

Multiple sequence alignment