Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CCX78_RS03705 Genome accession   NZ_AP017931
Coordinates   720851..721564 (-) Length   237 a.a.
NCBI ID   WP_016265311.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 715851..726564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS03685 (LASAK_00732) - 715865..716380 (+) 516 WP_231952375.1 VanZ family protein -
  CCX78_RS03690 (LASAK_00733) - 716667..717533 (+) 867 WP_096584757.1 GRP family sugar transporter -
  CCX78_RS03695 (LASAK_00734) - 717699..720245 (+) 2547 WP_096584760.1 YfhO family protein -
  CCX78_RS03700 (LASAK_00735) - 720350..720787 (+) 438 WP_056948751.1 hypothetical protein -
  CCX78_RS03705 (LASAK_00736) treR 720851..721564 (-) 714 WP_016265311.1 trehalose operon repressor Regulator
  CCX78_RS03710 (LASAK_00737) - 721756..722676 (-) 921 WP_011373852.1 IS30-like element ISLsa1 family transposase -
  CCX78_RS03715 (LASAK_00738) - 722732..724252 (+) 1521 WP_414843084.1 PTS transporter subunit EIIC -
  CCX78_RS03720 (LASAK_00739) - 724266..725915 (+) 1650 WP_096584763.1 alpha,alpha-phosphotrehalase -
  CCX78_RS03725 (LASAK_00740) - 725929..726420 (+) 492 WP_016265308.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26798.60 Da        Isoelectric Point: 6.5879

>NTDB_id=57741 CCX78_RS03705 WP_016265311.1 720851..721564(-) (treR) [Latilactobacillus sakei strain LK-145]
MSKKYEIIYRELVHKITNHVYPANSFLPSENELATAYGTSRETVRKALASLLENGFIHKIKGKGSLVLDFDKYAFPISGL
TSYRELDSLFEMHTQTTVLQLQKATVPQAPFHLDPTEILPATYIQRLRTVDGEPIVIDNDYVLTSVVPEISRAVAQDSLY
HYFEQELGLTIGYGNKEFTVIPATEEQCAILKLAPNSAVVSVKGITHLQDNTLIQFTESIHRADKFKFIEHARRQSI

Nucleotide


Download         Length: 714 bp        

>NTDB_id=57741 CCX78_RS03705 WP_016265311.1 720851..721564(-) (treR) [Latilactobacillus sakei strain LK-145]
ATGTCGAAAAAATATGAAATAATCTACCGCGAACTCGTCCATAAAATTACGAACCATGTTTATCCAGCCAACTCATTCTT
ACCCAGCGAAAACGAACTCGCAACAGCGTATGGTACCTCACGCGAAACAGTCCGCAAAGCACTCGCTAGCCTTTTAGAAA
ATGGCTTCATTCATAAGATCAAAGGCAAAGGCTCTTTAGTCCTTGATTTTGATAAATACGCCTTTCCCATTTCCGGCTTG
ACCAGTTACCGCGAATTGGATAGTCTCTTTGAAATGCACACGCAAACAACAGTCCTACAACTCCAAAAAGCAACCGTCCC
ACAAGCGCCTTTTCATTTAGACCCCACAGAGATTCTACCCGCGACCTATATTCAACGGTTACGGACCGTTGATGGTGAAC
CAATTGTTATCGATAACGACTACGTTCTAACCAGTGTTGTCCCAGAAATCTCACGGGCAGTCGCTCAGGATTCACTTTAT
CACTACTTTGAACAAGAATTGGGTCTAACTATTGGTTATGGGAATAAAGAATTCACTGTTATCCCTGCAACCGAAGAACA
GTGTGCCATTTTAAAACTCGCCCCTAATAGTGCGGTCGTTAGTGTTAAAGGTATCACTCATCTTCAGGATAATACCTTAA
TTCAATTTACCGAATCCATTCACCGGGCTGATAAATTTAAGTTTATTGAACACGCGCGCCGCCAATCAATTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(5-67)

UTRA domain (UTRA)

(120-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.339

98.312

0.367

Multiple sequence alignment