Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KQ261_RS05325 Genome accession   NZ_CP076693
Coordinates   1092123..1092752 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain S103EC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087123..1097752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ261_RS05305 (KQ261_05305) ycbZ 1087513..1089273 (-) 1761 WP_000156502.1 Lon protease family protein -
  KQ261_RS05310 (KQ261_05310) matP 1089459..1089911 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  KQ261_RS05315 (KQ261_05315) ompA 1089987..1091039 (-) 1053 WP_001346420.1 porin OmpA -
  KQ261_RS05320 (KQ261_05320) sulA 1091395..1091904 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  KQ261_RS05325 (KQ261_05325) sxy/tfoX 1092123..1092752 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KQ261_RS05330 (KQ261_05330) yccS 1092715..1094877 (-) 2163 WP_000875041.1 YccS family putative transporter -
  KQ261_RS05335 (KQ261_05335) yccF 1094887..1095333 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KQ261_RS05340 (KQ261_05340) helD 1095456..1097510 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=577370 KQ261_RS05325 WP_000839151.1 1092123..1092752(+) (sxy/tfoX) [Escherichia coli strain S103EC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=577370 KQ261_RS05325 WP_000839151.1 1092123..1092752(+) (sxy/tfoX) [Escherichia coli strain S103EC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995