Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LUW75_RS19525 Genome accession   NZ_CP094264
Coordinates   4307578..4309665 (-) Length   695 a.a.
NCBI ID   WP_250336772.1    Uniprot ID   -
Organism   Streptomyces sp. MRC013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4302578..4314665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW75_RS19505 (LUW75_19505) pgl 4303039..4303821 (-) 783 WP_250336770.1 6-phosphogluconolactonase -
  LUW75_RS19510 (LUW75_19510) opcA 4303818..4304900 (-) 1083 WP_250336771.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  LUW75_RS19515 (LUW75_19515) zwf 4304897..4306420 (-) 1524 WP_250337736.1 glucose-6-phosphate dehydrogenase -
  LUW75_RS19520 (LUW75_19520) tal 4306454..4307542 (-) 1089 Protein_3834 transaldolase -
  LUW75_RS19525 (LUW75_19525) recP/tkt 4307578..4309665 (-) 2088 WP_250336772.1 transketolase Machinery gene
  LUW75_RS19530 (LUW75_19530) - 4310042..4311037 (+) 996 WP_250336773.1 heme o synthase -
  LUW75_RS19535 (LUW75_19535) - 4311135..4311458 (+) 324 WP_250336774.1 hypothetical protein -
  LUW75_RS19540 (LUW75_19540) - 4311572..4312537 (-) 966 WP_250336775.1 COX15/CtaA family protein -
  LUW75_RS19545 (LUW75_19545) - 4312617..4313384 (-) 768 WP_250336776.1 ABC transporter permease -
  LUW75_RS19550 (LUW75_19550) - 4313381..4314306 (-) 926 Protein_3840 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 75083.10 Da        Isoelectric Point: 5.1984

>NTDB_id=577318 LUW75_RS19525 WP_250336772.1 4307578..4309665(-) (recP/tkt) [Streptomyces sp. MRC013]
MSTKPITTDLEWTALDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADPDWAGRDRFVLSAGHSS
LTLYTQLYLAGFGLELDDLKAFRTWGSKTPGHPEYGHTRGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAPGTSPF
DHFVYVVAGDGCLQEGIAAEASSMAGHQRLGNLIMLWDDNHISIEGDTETAVSEDTLKRYEAYGWHVQRVEQREDGDLDP
AALYAAVQAAKAETGRPSFIAMRSIIAWPAPNAQNTEAAHGSALGEEEVAATKRVLGFDPEKSFEVADEVIAHTRGALDR
GREARAAWEEDLRRWRAANPERAAEFDRISAGELPKGWEERLPVFEAGKAVATRAASGKVLQALGPVVPELWGGSADLAG
SNNTTIDKTSSFLPEGNPLPEADPYGRTIHFGIREHAMAAEMNGITLHGNTRVFGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETAIAWREILRRWTKEFGKGAPHGLVLTRQGVPTYEPDE
GTARGGYVLADAEGGEPRVVLIATGSEVHLAVEARERLQAEGVPTRVVSMPCVEWFEEQDRGYRDSVLPPSVRARVAVEA
GIGLTWHRYVGDAGRIVSLEHFGASADGKLLFREYGFTPEAVAAAARESIAAAAR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=577318 LUW75_RS19525 WP_250336772.1 4307578..4309665(-) (recP/tkt) [Streptomyces sp. MRC013]
GTGAGCACCAAGCCGATCACCACAGACCTCGAATGGACCGCACTGGACCAGCGTGCCGTGGACACCGCCCGTGTCCTGGC
CGCGGACGCCGTACAGAAGGTCGGCAACGGCCATCCGGGGACGGCCATGAGCCTGGCCCCCGCGGCGTACACCCTCTTCC
AGAAGGTGATGCGCCACGATCCGGCGGACCCGGACTGGGCCGGGCGCGACCGCTTCGTGCTGTCCGCGGGCCACTCCTCG
CTGACCTTGTACACCCAGCTCTACCTTGCCGGTTTCGGCCTGGAGCTGGACGACCTGAAGGCGTTCCGCACCTGGGGCTC
GAAGACCCCGGGCCACCCGGAGTACGGCCACACCAGGGGCGTGGAGACGACGACCGGCCCGCTGGGCCAGGGCGTCGCCA
ACGCCGTCGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTGTTCGACCCGGAGGCGGCGCCCGGCACCTCGCCGTTC
GACCACTTCGTGTACGTCGTCGCCGGTGACGGCTGCCTCCAGGAGGGCATCGCCGCGGAGGCGTCCTCGATGGCCGGGCA
CCAGAGGCTCGGCAACCTGATCATGTTGTGGGACGACAACCACATCTCGATCGAGGGCGATACCGAGACCGCCGTGTCCG
AGGACACCCTGAAGCGGTACGAGGCGTACGGCTGGCACGTGCAGCGCGTCGAGCAGCGGGAGGACGGGGACCTCGACCCG
GCGGCCCTGTACGCGGCCGTGCAGGCGGCGAAGGCGGAGACCGGCCGCCCGTCGTTCATCGCGATGCGCTCGATCATCGC
CTGGCCCGCGCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTGGGCGAGGAGGAGGTCGCGGCCACCAAGC
GCGTGCTGGGCTTCGACCCGGAGAAGTCGTTCGAGGTGGCCGACGAGGTCATCGCGCACACCCGCGGGGCCCTGGACCGG
GGCCGCGAGGCCCGCGCCGCCTGGGAGGAGGACCTCCGGCGGTGGCGCGCCGCCAACCCGGAGCGCGCCGCCGAGTTCGA
CCGGATCTCCGCGGGCGAGCTGCCCAAGGGCTGGGAGGAGAGGCTCCCGGTCTTCGAGGCGGGCAAGGCCGTCGCCACGC
GCGCCGCGTCCGGCAAGGTCCTCCAGGCGCTCGGCCCGGTCGTCCCCGAGCTGTGGGGCGGCTCCGCCGACCTGGCCGGC
TCGAACAACACGACGATCGACAAGACGTCGTCGTTCCTCCCCGAGGGCAACCCCCTGCCGGAGGCCGACCCCTACGGCCG
CACGATCCACTTCGGCATCCGCGAGCACGCCATGGCCGCCGAGATGAACGGCATCACGCTCCACGGCAACACGCGGGTCT
TCGGCGGCACCTTCCTGGTCTTTTCCGACTACATGCGCAACGCGGTCCGGCTCTCGGCGCTGATGCACCTGCCGGTGACG
TACGTGTGGACCCACGACTCGATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCCGTGGAGCACCTGGCGTCGCTGCG
CGCCATCCCCGGCCTGAACGTGGTCCGCCCGGCCGACGCGAACGAGACGGCGATCGCCTGGCGCGAGATCCTCAGGCGCT
GGACCAAGGAGTTCGGCAAGGGCGCCCCGCACGGCCTGGTGCTGACCCGCCAGGGCGTGCCGACGTACGAACCGGACGAG
GGGACCGCGCGCGGCGGCTACGTCCTGGCCGACGCCGAGGGCGGCGAACCGCGGGTCGTGCTGATCGCCACCGGGTCCGA
GGTGCACCTGGCCGTGGAAGCGCGCGAGCGGCTCCAGGCGGAGGGCGTGCCCACGCGCGTGGTGTCGATGCCGTGCGTCG
AGTGGTTCGAGGAGCAGGACCGGGGGTACCGGGACTCGGTGCTGCCCCCGTCGGTGAGGGCGCGGGTGGCGGTGGAGGCC
GGTATCGGTCTGACCTGGCACCGGTACGTCGGTGACGCGGGCCGGATCGTGTCGCTGGAGCACTTCGGTGCCTCGGCCGA
CGGCAAGCTGCTGTTCCGGGAGTACGGCTTCACCCCGGAGGCCGTGGCCGCCGCCGCGCGGGAATCGATCGCGGCCGCGG
CGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(576-682)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.109

97.986

0.452