Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LUW75_RS06950 Genome accession   NZ_CP094264
Coordinates   1573888..1574946 (-) Length   352 a.a.
NCBI ID   WP_250334839.1    Uniprot ID   -
Organism   Streptomyces sp. MRC013     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1568888..1579946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW75_RS06930 (LUW75_06930) - 1569005..1570030 (-) 1026 WP_250334835.1 ABC transporter permease -
  LUW75_RS06935 (LUW75_06935) - 1570023..1570946 (-) 924 WP_250334836.1 ABC transporter permease -
  LUW75_RS06940 (LUW75_06940) - 1570978..1572597 (-) 1620 WP_250334837.1 ABC transporter substrate-binding protein -
  LUW75_RS06945 (LUW75_06945) - 1572813..1573895 (-) 1083 WP_250334838.1 dipeptide ABC transporter ATP-binding protein -
  LUW75_RS06950 (LUW75_06950) amiE 1573888..1574946 (-) 1059 WP_250334839.1 ABC transporter ATP-binding protein Regulator
  LUW75_RS06955 (LUW75_06955) - 1574958..1575944 (-) 987 WP_250334840.1 ABC transporter permease -
  LUW75_RS06960 (LUW75_06960) - 1575937..1576866 (-) 930 WP_250334841.1 ABC transporter permease -
  LUW75_RS06965 (LUW75_06965) - 1577003..1578619 (-) 1617 WP_250334842.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38550.63 Da        Isoelectric Point: 7.5346

>NTDB_id=577293 LUW75_RS06950 WP_250334839.1 1573888..1574946(-) (amiE) [Streptomyces sp. MRC013]
MITTEKTGGVPAPRGAADDVRPLLEVRDLHVEFHTRDGVAKAVNGVNYSVSSGETLAVLGESGSGKSVTAQAIMGILDMP
PGRIPKGEILFHGQDMLKMSAEERRRIRGRKIAMIFQDALSSLNPVLSVGYQLSEMFRVHLGLSKKDAKAKAIELMDRVK
IPAAKARVNDYPHQFSGGMRQRIMIAMALSLEPDLIIADEPTTALDVTVQAQVMELLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLTRIPTGCAFNPRCPKAQDVCRT
DLPPLHQVTEQDGTELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=577293 LUW75_RS06950 WP_250334839.1 1573888..1574946(-) (amiE) [Streptomyces sp. MRC013]
GTGATCACCACTGAAAAGACCGGGGGCGTCCCCGCGCCGCGCGGTGCCGCGGACGACGTCCGGCCGCTGCTCGAAGTGCG
CGACCTCCACGTGGAGTTCCACACCCGGGACGGCGTCGCCAAGGCCGTCAACGGAGTGAACTACTCGGTCAGCTCCGGCG
AGACCCTCGCCGTGCTGGGCGAGTCGGGCTCCGGCAAGTCCGTGACGGCCCAGGCCATCATGGGCATCCTCGACATGCCT
CCGGGCCGCATCCCCAAGGGCGAGATCCTCTTCCACGGCCAGGACATGCTCAAGATGTCCGCCGAGGAGCGCCGCCGCAT
CCGCGGGCGCAAGATCGCGATGATCTTCCAGGACGCGCTGTCGTCGCTGAACCCGGTGCTCTCCGTGGGCTACCAGCTCA
GCGAGATGTTCCGCGTCCACCTCGGCCTGTCCAAGAAGGACGCCAAGGCCAAGGCCATCGAGCTGATGGACCGGGTGAAG
ATCCCGGCCGCCAAGGCCCGGGTGAACGACTACCCGCACCAGTTCTCCGGCGGCATGCGCCAGCGCATCATGATCGCCAT
GGCGCTCTCCCTGGAGCCGGACCTGATCATCGCCGACGAGCCGACGACCGCTCTCGACGTGACGGTCCAGGCCCAGGTCA
TGGAGCTGCTCGCGGAGCTCCAGCGCGAGTACAACATGGGTCTCATCCTCATCACCCACGACCTCGGCGTCGTCGCCGAC
GTCGCCGACAAGATCGCGGTGATGTACGCGGGCCGCATCGTCGAGACGGCCCCCGTCCACGAGCTCTACAAGCGCCCCGC
CCACCCGTACACGCGCGGCCTGCTGGACTCGATCCCGCGTCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGCC
TGCCGCCCAACCTGACGCGCATCCCCACCGGCTGCGCGTTCAACCCGCGGTGCCCGAAGGCCCAGGACGTCTGCCGCACC
GATCTTCCGCCGCTGCACCAGGTCACCGAGCAGGACGGCACCGAGCTCGTCGGCCGCGGCAGTGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

49.515

87.784

0.435
  amiE Streptococcus thermophilus LMG 18311

48.867

87.784

0.429
  amiE Streptococcus thermophilus LMD-9

48.867

87.784

0.429
  oppD Streptococcus mutans UA159

47.403

87.5

0.415