Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   LUW75_RS03265 Genome accession   NZ_CP094264
Coordinates   716954..718795 (-) Length   613 a.a.
NCBI ID   WP_250334278.1    Uniprot ID   -
Organism   Streptomyces sp. MRC013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 711954..723795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW75_RS03255 (LUW75_03255) - 713346..714572 (+) 1227 WP_250334277.1 acetyl-CoA C-acyltransferase -
  LUW75_RS03260 (LUW75_03260) - 714569..716699 (+) 2131 Protein_654 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein -
  LUW75_RS03265 (LUW75_03265) recQ 716954..718795 (-) 1842 WP_250334278.1 DNA helicase RecQ Machinery gene
  LUW75_RS03270 (LUW75_03270) - 718866..719243 (+) 378 WP_250334279.1 NTP pyrophosphohydrolase -
  LUW75_RS03275 (LUW75_03275) - 719252..720775 (-) 1524 WP_250334280.1 amino acid permease -
  LUW75_RS03280 (LUW75_03280) dxs 720901..722859 (-) 1959 WP_250334281.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 66970.18 Da        Isoelectric Point: 6.6676

>NTDB_id=577279 LUW75_RS03265 WP_250334278.1 716954..718795(-) (recQ) [Streptomyces sp. MRC013]
MTSPHTSDADRALAVLGRVFGYDSFRGQQREIIEHVAGGGDALVLMPTGGGKSLCYQIPALLRPGVGVVVSPLIALMQDQ
VDALRAAGVRAGFLNSTQDLDERRLVEAEFAAGELDLLYLAPERLRVESTLRLLERGAISLFAIDEAHCVAQWGHDFRPD
YLQLSRLHERWPDVPRIALTATATRATHAEIASRLNLQDARHFVASFDRPNIQYRIVPKNEPRKQLLALLREEHEGDAGI
VYCLSRASVEKTAAFLVEHGVEAVPYHAGLDAGTRAENQARFLREDGLVVVATIAFGMGIDKPDVRFVAHLDLPKSVEGY
YQETGRAGRDGLPSTAWLAYGLNDVVQQRRMIDSGEGDEEHRRRLAAHLDAMLALCETAECRRVRLLAYFGQESGPCGNC
DTCLTPPKTWDGTVAAQKALSTVVRLKRERNQSFGVGQIVDILLGRKTDKVIRFDHDALSVFGIGTDLTEAQWRGVVRQL
LAQGLLAVQGEFNTLALTGESAEVLSGRRRVLLRSEPEKPARTSAKSGGGRRKTAPVDLPEEALPLFERLRAWRAATARE
QGVPAYVVFHDATLREIAAAPPATLAELGTVSGVGENKLARYGQGLLDALAGD

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=577279 LUW75_RS03265 WP_250334278.1 716954..718795(-) (recQ) [Streptomyces sp. MRC013]
ATGACTTCCCCGCACACATCCGACGCGGACCGGGCCCTCGCGGTCCTGGGCCGGGTCTTCGGCTACGACTCGTTCCGCGG
ACAGCAGCGGGAGATCATCGAACACGTCGCGGGCGGCGGCGACGCCCTGGTCCTCATGCCGACCGGCGGCGGCAAGTCCC
TCTGCTACCAGATCCCCGCGCTGCTCCGCCCCGGCGTCGGCGTGGTCGTCTCCCCGCTGATCGCGCTCATGCAGGACCAG
GTCGACGCGTTGCGCGCCGCCGGGGTGCGTGCGGGGTTCCTCAACTCCACGCAGGACCTCGACGAACGCCGGCTGGTGGA
GGCCGAGTTCGCCGCGGGCGAGCTGGACCTGCTGTACCTGGCGCCCGAGCGGCTGCGCGTCGAGTCGACGCTGCGGCTGC
TGGAGCGGGGCGCGATCTCGCTGTTCGCCATCGACGAGGCGCACTGCGTCGCCCAGTGGGGCCACGACTTCCGGCCGGAC
TACCTCCAGCTGTCCCGGCTGCACGAGCGCTGGCCCGACGTGCCGCGCATCGCCCTGACCGCGACCGCGACGCGGGCGAC
GCACGCGGAGATCGCCTCCCGGCTGAACCTGCAGGACGCCCGGCACTTCGTCGCCAGCTTCGACCGGCCCAACATCCAGT
ACCGCATCGTCCCGAAGAACGAGCCGCGCAAGCAGCTCCTCGCCCTGCTCCGGGAGGAGCACGAGGGCGACGCGGGCATC
GTCTACTGCCTGTCGCGCGCCTCCGTGGAGAAGACCGCCGCGTTCCTCGTCGAGCACGGCGTCGAGGCCGTCCCCTACCA
CGCGGGCCTCGACGCGGGGACCCGCGCGGAGAACCAGGCGCGGTTCCTCCGGGAGGACGGGCTGGTCGTCGTGGCGACCA
TCGCGTTCGGCATGGGCATCGACAAGCCGGACGTCCGGTTCGTCGCCCACCTGGACCTGCCGAAGTCCGTGGAGGGGTAC
TACCAGGAGACCGGCCGCGCCGGCCGCGACGGCCTGCCGTCCACGGCCTGGCTGGCCTACGGGCTCAACGACGTGGTGCA
GCAGCGCCGCATGATCGACAGCGGCGAGGGCGACGAGGAGCACCGCCGCCGACTCGCCGCGCACCTCGACGCGATGCTGG
CGCTGTGCGAGACCGCCGAGTGCCGCCGCGTCCGGTTGCTGGCCTACTTCGGCCAGGAGAGCGGTCCCTGCGGCAACTGC
GACACGTGTCTGACGCCGCCGAAGACCTGGGACGGCACCGTCGCCGCCCAGAAGGCGCTGTCGACGGTCGTCCGGCTGAA
GCGGGAGCGCAACCAGTCGTTCGGCGTCGGCCAGATCGTCGACATCCTCCTCGGCCGCAAGACCGACAAGGTCATCCGCT
TCGACCACGACGCGCTCAGCGTCTTCGGGATCGGTACGGACCTGACGGAGGCCCAGTGGCGGGGCGTGGTGCGGCAGTTG
CTCGCCCAGGGGCTCCTCGCCGTGCAGGGCGAGTTCAACACGCTCGCCCTCACCGGCGAGTCGGCCGAGGTGCTCTCGGG
CCGCCGCAGGGTGCTGCTGCGCAGCGAGCCGGAGAAGCCCGCGCGCACTTCCGCGAAGTCCGGCGGCGGCAGGAGGAAGA
CCGCGCCCGTCGACCTGCCGGAGGAGGCGCTGCCCCTCTTCGAGCGGCTGCGCGCCTGGCGGGCCGCCACGGCCAGGGAG
CAGGGCGTCCCGGCGTACGTCGTCTTCCACGACGCGACGCTGCGGGAGATCGCCGCCGCCCCGCCCGCCACCCTCGCCGA
GCTGGGCACCGTCAGCGGTGTCGGCGAGAACAAGCTCGCCAGGTACGGGCAGGGGCTCCTCGACGCGCTGGCCGGGGACT
GA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(545-610)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

DEAD/DEAH box helicase (DEAD)

(29-185)

Helicase conserved C-terminal domain (Helicase_C)

(224-330)

RQC domain (RQC)

(406-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.907

98.532

0.383