Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CCX78_RS02075 Genome accession   NZ_AP017931
Coordinates   401485..402291 (+) Length   268 a.a.
NCBI ID   WP_016265510.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 396485..407291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS02040 (LASAK_00391) - 396608..396850 (-) 243 WP_011375173.1 hypothetical protein -
  CCX78_RS02045 (LASAK_00392) - 396937..397407 (-) 471 WP_011375172.1 nucleoside 2-deoxyribosyltransferase -
  CCX78_RS02055 (LASAK_00394) - 397516..398585 (+) 1070 WP_099769415.1 IS3-like element IS1520 family transposase -
  CCX78_RS02060 (LASAK_00395) - 398803..399309 (+) 507 WP_096584367.1 DUF805 domain-containing protein -
  CCX78_RS02065 (LASAK_00396) rlmD 399525..400916 (-) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  CCX78_RS02070 (LASAK_00397) - 401304..401483 (+) 180 WP_011375169.1 hypothetical protein -
  CCX78_RS02075 (LASAK_00398) recX 401485..402291 (+) 807 WP_016265510.1 recombination regulator RecX Regulator
  CCX78_RS02080 (LASAK_00399) mutY 402278..403381 (+) 1104 WP_076632336.1 A/G-specific adenine glycosylase -
  CCX78_RS02085 (LASAK_00400) - 403468..404004 (+) 537 WP_172425577.1 DUF402 domain-containing protein -
  CCX78_RS02090 (LASAK_00401) - 404073..405782 (-) 1710 WP_035145094.1 glycosyltransferase family 8 protein -
  CCX78_RS02095 (LASAK_00402) - 405915..406388 (-) 474 WP_011375164.1 hypothetical protein -
  CCX78_RS02100 (LASAK_00403) - 406464..406895 (-) 432 WP_011375163.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31069.99 Da        Isoelectric Point: 6.0698

>NTDB_id=57725 CCX78_RS02075 WP_016265510.1 401485..402291(+) (recX) [Latilactobacillus sakei strain LK-145]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=57725 CCX78_RS02075 WP_016265510.1 401485..402291(+) (recX) [Latilactobacillus sakei strain LK-145]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGCGACATTCAAA
AAGAAGACGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCGGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCATTGACGTTATATACAGATGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAGCAAAAGATTAAACAAGGCTT
GATGCAAAAGGGCTTCGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTACCGCTTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

37.643

98.134

0.369

Multiple sequence alignment