Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MP387_RS07600 Genome accession   NZ_CP094226
Coordinates   1547647..1548243 (+) Length   198 a.a.
NCBI ID   WP_000248755.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1542647..1553243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS07575 (MP387_07575) - 1543553..1544998 (-) 1446 WP_242746015.1 cell division site-positioning protein MapZ family protein -
  MP387_RS07580 (MP387_07580) - 1545011..1546168 (-) 1158 WP_242746017.1 class I SAM-dependent RNA methyltransferase -
  MP387_RS07590 (MP387_07590) gpsB 1546654..1546983 (-) 330 WP_000146523.1 cell division regulator GpsB -
  MP387_RS07595 (MP387_07595) - 1547053..1547580 (-) 528 WP_000199583.1 SLOG family protein -
  MP387_RS07600 (MP387_07600) recU 1547647..1548243 (+) 597 WP_000248755.1 Holliday junction resolvase RecU Machinery gene
  MP387_RS07605 (MP387_07605) pbp1a 1548240..1550414 (+) 2175 WP_242746019.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23093.52 Da        Isoelectric Point: 9.8088

>NTDB_id=577249 MP387_RS07600 WP_000248755.1 1547647..1548243(+) (recU) [Streptococcus oralis strain 1648]
MVNYPHKISSQKRQALLSQTKNFANRGMSFEKMINATNDYYLSHGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYDGYYIDFEAKETRQKHAIPMKNFHLHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAIDLIRFYHQDKGQK
SMPLGYIRENGYRIEPGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=577249 MP387_RS07600 WP_000248755.1 1547647..1548243(+) (recU) [Streptococcus oralis strain 1648]
ATGGTCAACTATCCACATAAAATTTCATCTCAAAAGAGGCAAGCACTCCTGTCACAAACTAAAAATTTCGCAAATCGGGG
AATGTCTTTTGAAAAGATGATCAATGCTACGAACGACTACTATTTGTCGCATGGGTTAGCTGTTATTCACAAGAAACCGA
CTCCCATCCAAATCGTACGTGTCGACTATCCCCAACGAAGTCGAGCCAAGATCGTTGAAGCCTACTTTAGACAAGCCTCA
ACTACTGACTATTCAGGGGTTTATGATGGATACTACATCGACTTTGAAGCAAAGGAAACCAGGCAAAAACATGCGATACC
GATGAAGAATTTTCATCTCCATCAAATCCAGCATATGGAACAAGTCCTTGCCCAGCAAGGAATCTGCTTTGTACTCCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCTATTGACCTCATCCGTTTCTATCATCAGGATAAGGGACAGAAG
TCAATGCCACTTGGATATATTCGAGAAAATGGATATAGGATTGAGCCTGGTGCCTTTCCTCAAATTCCCTACCTCGACAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.223

99.495

0.48