Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   MP387_RS07510 Genome accession   NZ_CP094226
Coordinates   1529388..1531757 (+) Length   789 a.a.
NCBI ID   WP_242745968.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1524388..1536757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS07490 (MP387_07490) - 1526827..1527375 (-) 549 WP_242745963.1 CvpA family protein -
  MP387_RS07495 (MP387_07495) zapA 1527372..1527674 (-) 303 WP_000002028.1 cell division protein ZapA -
  MP387_RS07500 (MP387_07500) rnhC 1527761..1528642 (+) 882 WP_242745966.1 ribonuclease HIII -
  MP387_RS07505 (MP387_07505) lepB 1528646..1529260 (+) 615 WP_001083995.1 signal peptidase I -
  MP387_RS07510 (MP387_07510) recD/recD2/recDB 1529388..1531757 (+) 2370 WP_242745968.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MP387_RS07515 (MP387_07515) tig 1531805..1533088 (-) 1284 WP_000116506.1 trigger factor -
  MP387_RS07520 (MP387_07520) - 1533179..1533835 (-) 657 WP_242745970.1 DNA alkylation repair protein -
  MP387_RS07525 (MP387_07525) vraR 1533836..1534468 (-) 633 WP_042902850.1 response regulator transcription factor Regulator
  MP387_RS07530 (MP387_07530) - 1534478..1535476 (-) 999 WP_242745975.1 sensor histidine kinase -
  MP387_RS07535 (MP387_07535) liaF 1535473..1536171 (-) 699 WP_242745991.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88453.10 Da        Isoelectric Point: 4.5026

>NTDB_id=577246 MP387_RS07510 WP_242745968.1 1529388..1531757(+) (recD/recD2/recDB) [Streptococcus oralis strain 1648]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
NPTSKGLVKYFSSSHFKGIGLKTAQKIVDSYGDNTIDEILEHPEKLEGISGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDIVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMDA
RDLLEQTLTLLESSRPVELDPSQVAQELSHLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKEKQKNQDLETIHKH
ISTVEQELGIKYDDIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLSKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQISLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPQQKGQVNFEATQCHYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVIYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFSDLIETNIEESKQAFSETATPSDSEQSYIITEENWSSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=577246 MP387_RS07510 WP_242745968.1 1529388..1531757(+) (recD/recD2/recDB) [Streptococcus oralis strain 1648]
ATGGAAGTTTATTTTTCAGGCACCATTGAACGTATTATTTTTGAAAATCCTAGTAATTTTTATCGCATTCTCCTCCTAGA
TATTGAAGATACGGACGCAGAGGACTTTGACGATTTTGAAATCATCGTTACAGGAACCATGGCGGACGTGATTGAAGGGG
AAGACTACACTTTTTGGGGGCAAATCGTTCAGCACTCCAAGTATGGGGAACAGCTACAGATCAGTCGTTACGAGCGGGCA
AACCCCACTAGCAAGGGCCTTGTCAAGTACTTTTCTAGCAGTCATTTCAAGGGGATTGGTCTCAAAACTGCTCAGAAAAT
CGTCGATAGCTATGGTGACAATACTATTGATGAAATTCTGGAACATCCTGAAAAGCTAGAAGGCATCTCAGGACTCTCTG
CCAAAAACCGTGAGGCTTTTGTCTCCACCCTCCGTCTCAACTATGGGACAGAAATGGTCTTGGCAAAACTGGCCAACTAC
GGCATTCCCAATAAACTAGCCTTTCAGATTCAAGATTTTTACAAGGAAGAAACGCTGGATATTGTTGAAAATTATCCCTA
TCAACTGGTTGAGGATATCAAGGGCTTGGGTTTTACCATTGCTGACCAATTAGCTGCCGAACTAGGTATCGAAAGTCAAG
CTCCTGAGCGCTTCCGCGCTGGCCTTGTCCACAGTCTCTTTCAAGGCTGTATGGATACGGGCGATACCTATATGGATGCC
CGAGATTTGCTGGAACAAACCCTGACTCTCCTAGAGTCTTCCCGTCCCGTGGAACTCGATCCCAGCCAAGTTGCTCAGGA
ATTATCTCATCTGATCGAAGAAGATAAGGTCCAGCAGATTGATACCAAAATCTTTGATAACAGCCTCTTTTTTGCTGAGG
AAGGCATTCGCAGTCACTTGGTTCGTATCCTTGAAAAAGAAAAGCAGAAAAATCAGGATTTGGAAACCATTCACAAGCAT
ATCTCTACTGTCGAGCAAGAACTGGGGATTAAGTACGATGACATTCAAAAGCAGGCTATCTGCGACGCTATCCAGAACAA
GGTCTTTATCCTGACAGGTGGGCCTGGTACAGGTAAGACGACTGTTATCAATGGGATTATCGCTGTTTATGCCCTCTTAG
AAGGGCTTGATCTCAGTAAAAAAAGCAACTTACCTATCCTTCTCGCTGCGCCAACTGGTCGTGCAGCTCGACGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACATCGCCATTTGGGGATGACGGGAGACGATGATACCAGTCATCTAGAAGA
TTATCTAGATGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTGGATACTTGGCTAGCTAACCAACTCTTCTCCAATA
TCTCCTCTAACAGTAAAATCCTTATCGTGGGAGACAGTGACCAGTTGCCTTCTGTTAGTCCCGGACAAGTCCTTGCTGAC
CTGCTCCAGATATCCCTGATTCCGCAGACCCGCTTGGAACGGATTTACCGTCAGAGCGAAGAATCAACTATCGTTACATT
GGCGAGTCAGATTCGACAAGGCATCTTGCCAGCTGACTTTACCCAGAAAAAGGCAGACCGTTCCTACTTTGAAATCGCTA
GTGGCCATATCCCAGCTACCATTGAGAAAATTCTCGGTGCTGCCCTCAGAAGTGGCATTCCGGCTCGAGATATTCAAGTG
CTAGCGCCTATGTATCGAGGTACTGCTGGTATTGACGCCATCAACCAACTCATGCAAGACCTGCTCAATCCTCAGCAAAA
GGGGCAAGTGAACTTTGAAGCAACTCAGTGTCACTATCGAACAGGGGACAAGGTCATTCACCTAGTCAACGACGCCGAAG
TCAATGTCTTTAACGGAGACCTAGGCTACATTACAGATTTGATTCCTGGAAAATACACCGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAGGTCATCTACCCACGTAACGAATGGTACAAGATCCGTCTGGCCTATGCCATGAGTAT
CCACAAGTCTCAGGGAAGTGAGTTTCCTGTTGTCATCCTGCCCATCACCAGTGCTAGCAAGCGCATGCTGGAGCGGAATC
TCATCTACACAGCTATCACACGGGCCAAGAGCAAGCTCATCCTTCTTGGCGAATTACAGGCCTTTGACTATGCAGTCAAG
CATATCGGGACTGCCCGCAAGACCTATCTGATTGAGCGTTTCAGTGATTTAATTGAAACTAATATTGAAGAAAGCAAACA
AGCCTTCTCTGAAACTGCCACACCAAGTGACTCTGAACAATCCTACATCATCACCGAGGAAAACTGGTCTAGCATCCCAG
CCATGATCGGGATTACAGATGCAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.021

95.311

0.401