Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MP387_RS06880 Genome accession   NZ_CP094226
Coordinates   1402652..1404871 (-) Length   739 a.a.
NCBI ID   WP_242748056.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1397652..1409871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS06860 (MP387_06860) - 1397905..1398606 (-) 702 WP_242745875.1 M57 family metalloprotease -
  MP387_RS06865 (MP387_06865) - 1398711..1399490 (-) 780 WP_242745876.1 alpha/beta hydrolase family protein -
  MP387_RS06870 (MP387_06870) - 1399559..1401220 (-) 1662 WP_242745877.1 ribonuclease J -
  MP387_RS06875 (MP387_06875) - 1401722..1402369 (-) 648 WP_242745878.1 CHAP domain-containing protein -
  MP387_RS06880 (MP387_06880) recJ 1402652..1404871 (-) 2220 WP_242748056.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MP387_RS06885 (MP387_06885) - 1405049..1405807 (+) 759 WP_242745879.1 amino acid ABC transporter ATP-binding protein -
  MP387_RS06890 (MP387_06890) - 1405818..1406612 (+) 795 WP_242745880.1 transporter substrate-binding domain-containing protein -
  MP387_RS06895 (MP387_06895) - 1406625..1407302 (+) 678 WP_242745881.1 amino acid ABC transporter permease -
  MP387_RS06900 (MP387_06900) - 1407312..1407971 (+) 660 WP_000443890.1 amino acid ABC transporter permease -
  MP387_RS06905 (MP387_06905) - 1408101..1408883 (+) 783 WP_242745882.1 DUF4037 domain-containing protein -
  MP387_RS06910 (MP387_06910) - 1409025..1409462 (-) 438 WP_242745883.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82513.01 Da        Isoelectric Point: 4.3162

>NTDB_id=577240 MP387_RS06880 WP_242748056.1 1402652..1404871(-) (recJ) [Streptococcus oralis strain 1648]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAFAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQLAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEEDRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLTDLSQVLEDYIREKGADASGKNKLNLDEELDLETLSLETVKSFERLAPFGMDNQKP
VFYIKDFHVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNVALPEGVPVLDFSGEVPDLATSDAVVVKTIPEDITLLKTIFQEQHFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIAESQIYQNLKQTVKN
QEMMALGTVQEMYDFLMEL

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=577240 MP387_RS06880 WP_242748056.1 1402652..1404871(-) (recJ) [Streptococcus oralis strain 1648]
TTGATAACTCCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
GCTGGGTCCTGAGGTGGCTCGGTTATTATTTGAAAGAGGGATTCAGGATGAGGAAAGTCTCAAGAAGTTTTTAGAACCTT
CTTTGGAGGACTTACATGACCCCTATCTGCTCCATGATATGGATAAGGCAGTGGAGCGGATTCGTCAGGCCATTGAAGAA
GGGGAGAATATCCTCGTTTACGGTGACTATGATGCGGATGGCATGACTTCAGCTTCGATTGTGAAGGAAAGTTTGGAACA
GCTTGGAGCGGAGTGCCGTGTTTACCTGCCAAATCGTTTTACCGATGGCTATGGTCCCAATGCCAGTGTCTATAAATACT
TTATCGAGCAAGAGGGAATTTCCTTGATTGTGACGGTGGATAATGGGGTTGCAGGTCACGAAGCAATTGAACTGGCCCAG
TCTATGGGAGTGGATGTCATTGTGACCGACCACCATTCCATGCCGGAAACTCTTCCTGATGCCTTTGCGATTGTTCACCC
TGAGCATCCGGATGCGGACTATCCTTTCAAATATCTAGCTGGTTGTGGAGTGGCATTCAAGCTAGCTTGCGCTCTTTTAG
AAGAAGTGCAAGTGGAATTGCTTGATTTGGTTGCTATCGGAACTATTGCGGATATGGTGAGTCTGACGGATGAAAACCGT
ATCTTGGTTCAATATGGTCTGGAAATGTTGGGACATACCCAGCGCATCGGTCTGCAAGAAATGCTAGACATGGCTGGGAT
TGCTGCTAACGAAGTGACAGAAGAAACGGTTGGCTTTCAGCTTGCCCCTCGTTTAAATGCCTTAGGGCGCTTGGACGATC
CTAATCCAGCTATTGATTTGTTGACTGGATTTGACGATGAGGAAGCACATGAGATTGCCCTCATGATTCACCAGAAAAAC
GAAGAGCGCAAGGAAATTGTTCAGTCAATCTATGAAGAAGCTAAGACCATGGTGGATCCTGAGAAGAAGGTCCAGGTTTT
GGCCAAGGAAGGCTGGAATCCTGGCGTTCTGGGTATCGTTGCTGGTCGTTTGTTGGAAGAACTAGGGCAGACAGTCATCG
TTCTTAATATAGAAGAAGATCGTGCCAAGGGTAGCGCTCGTAGTGTGGAAGCGGTCGATATTTTTGAAGCCTTAGATCCC
CATCGCGACCTCTTTATCGCCTTTGGCGGCCATGCTGGTGCAGCTGGAATGACGCTGGAAGTGGAGAAACTCACAGATTT
ATCTCAGGTTTTGGAAGATTATATCCGTGAAAAAGGCGCAGATGCTAGTGGTAAGAACAAGTTAAATCTAGATGAAGAGC
TAGACTTGGAGACGCTTAGCTTGGAAACAGTTAAAAGCTTTGAACGTTTAGCTCCCTTTGGAATGGACAATCAGAAACCT
GTTTTTTATATCAAGGATTTTCATGTCGAAAGTGCTAGAACCATGGGAGCAGGCAATGCCCACCTCAAACTAAAAATTTC
CAAGGGTGAGGCGAGTTTTGAAGTGGTGGCCTTCGGACAAGGTAGATGGGCGACAGAGTTTGCTCAAACCAAGAATCTAG
AATTGGCAGTCACCCTGTCTGTCAATCAATGGAATGGGCAAACTGCCCTCCAGTTGATGATGGTGGATGCTCGTGTGGAG
GGTGTTCAACTCTTTAACATTCGTGGGAAGAACGTAGCCCTGCCAGAAGGGGTTCCAGTCTTGGATTTCTCTGGAGAGGT
GCCAGATTTAGCGACTAGTGATGCTGTGGTTGTGAAAACCATTCCCGAGGATATTACCTTGCTGAAGACCATTTTTCAGG
AACAGCATTTCTCTGCTGTCTATTTCAAAAATGACATCGATAAAGCCTACTATCTGACAGGTTATGGGACTAGAGAACAG
TTTGCTAAATTGTACAAGACTATTTACCAGTTCCCAGAGTTTGATATTCGCTACAAGCTCAAAGATTTGGCGGCTTATCT
CAATATCCAACAAATCTTGCTGGTCAAGATGATCCAAGTATTTGAGGAACTGGGCTTTGTAACTATCAAAGATGGTGTCA
TGACAGTCAATAAAGAAGCGCCGAAAAGGGAAATTGCTGAAAGTCAGATTTACCAAAATCTCAAACAAACTGTAAAAAAT
CAAGAAATGATGGCGCTGGGTACCGTGCAGGAAATGTATGATTTTTTAATGGAGTTATAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-435)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

95.799

99.865

0.957
  recJ Bacillus subtilis subsp. subtilis str. 168

37.032

100

0.388