Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   MP387_RS04525 Genome accession   NZ_CP094226
Coordinates   925044..926114 (-) Length   356 a.a.
NCBI ID   WP_000817856.1    Uniprot ID   A0A1X1HU81
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 920044..931114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS04505 (MP387_04505) - 920380..921423 (+) 1044 WP_242747997.1 dihydrolipoamide acetyltransferase -
  MP387_RS04510 (MP387_04510) lpdA 921467..923170 (+) 1704 WP_242747999.1 dihydrolipoyl dehydrogenase -
  MP387_RS04515 (MP387_04515) - 923229..924218 (+) 990 WP_084859917.1 lipoate--protein ligase -
  MP387_RS04520 (MP387_04520) - 924324..924965 (+) 642 WP_070800460.1 hypothetical protein -
  MP387_RS04525 (MP387_04525) xerS 925044..926114 (-) 1071 WP_000817856.1 tyrosine recombinase XerS Machinery gene
  MP387_RS04530 (MP387_04530) - 926293..926730 (-) 438 WP_025170981.1 MepB family protein -
  MP387_RS04535 (MP387_04535) - 926796..927536 (-) 741 WP_242748001.1 CPBP family intramembrane glutamic endopeptidase -
  MP387_RS04540 (MP387_04540) - 927588..929138 (-) 1551 WP_242748003.1 ClC family H(+)/Cl(-) exchange transporter -
  MP387_RS04545 (MP387_04545) - 929151..929930 (-) 780 WP_242748005.1 ribonuclease HII -
  MP387_RS04550 (MP387_04550) ylqF 929917..930768 (-) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41184.31 Da        Isoelectric Point: 9.6031

>NTDB_id=577222 MP387_RS04525 WP_000817856.1 925044..926114(-) (xerS) [Streptococcus oralis strain 1648]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDME
AFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDLGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=577222 MP387_RS04525 WP_000817856.1 925044..926114(-) (xerS) [Streptococcus oralis strain 1648]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
CAAGCTTGCTGTGCCCTACAGTTTTACAACCTTGTACGAATATCTCAAGGAATACGATCGATTTTTCAGCTGGGTTTTAG
AGTCTGGAATTTCAAATGCTGATAAAATGTCTGATATTCCTTTATCTGTCTTGGAAAATATGTCTAAGAAAGATATGGAA
GCTTTTATCCTATATCTACGTGAACGTCCATTGCTGAATGCTAATACAACCAAGCAAGGTGTATCTCAGACGACCATCAA
TCGGACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACAGAGGAGGTTGAAAACGACCTGGGAGAACCCTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACCAAGAAAAAGAAAGAAACACTTGCTGCTAGAGCTGAAAACATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAGGAGTACCCACAACAGCTCTCAAATCGCGCTCT
CTCATCATTTAATAAGAACAAAGAACGTGATTTGGCCATTATTGCCCTTCTCCTAGCGTCTGGTGTCCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGACCTCAATCTCAAAATGATGGTGATCGATGTCACTCGAAAAGGGGGGAAACGTGATTCT
GTCAATGTCGCTGCTTTTGCTAAGCCTTACCTAGAGAATTATCTAGCCATTCGAAATCAACGCTATAAGACGGAAAAGAC
AGATACAGCTCTCTTTTTGACCTTATATCGAGGCGTTCCCAATCGTATTGATGCTTCTAGTGTTGAAAAGATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTCCGTGTAACTCCACACAAACTACGCCATACCCTGGCGACTAGGCTCTATGATGCTACT
AAATCGCAAGTTTTGGTCAGCCATCAGCTAGGACATGCCAGTACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAACAAAAGAATGCTTTAGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1HU81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986