Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KPF23_RS08965 Genome accession   NZ_CP076675
Coordinates   1835575..1836228 (-) Length   217 a.a.
NCBI ID   WP_038693798.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain XG19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1830575..1841228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF23_RS08950 (KPF23_08950) - 1831390..1832472 (-) 1083 WP_014938012.1 serine hydrolase -
  KPF23_RS08955 (KPF23_08955) - 1832584..1834239 (-) 1656 WP_014938011.1 ribonucleoside-diphosphate reductase subunit alpha -
  KPF23_RS08960 (KPF23_08960) - 1834290..1835264 (-) 975 WP_004918076.1 ribonucleotide-diphosphate reductase subunit beta -
  KPF23_RS08965 (KPF23_08965) comF 1835575..1836228 (-) 654 WP_038693798.1 ComF family protein Machinery gene
  KPF23_RS08975 (KPF23_08975) - 1836455..1836970 (-) 516 WP_253072919.1 hypothetical protein -
  KPF23_RS08980 (KPF23_08980) - 1837058..1837708 (-) 651 WP_014938007.1 HD domain-containing protein -
  KPF23_RS08985 (KPF23_08985) gdhA 1837840..1839198 (-) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  KPF23_RS08990 (KPF23_08990) dprA 1839382..1840485 (-) 1104 WP_014938005.1 DNA-processing protein DprA Machinery gene
  KPF23_RS08995 (KPF23_08995) - 1840488..1840865 (-) 378 WP_014938004.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25329.43 Da        Isoelectric Point: 9.4150

>NTDB_id=577221 KPF23_RS08965 WP_038693798.1 1835575..1836228(-) (comF) [Riemerella anatipestifer strain XG19]
MFLDFFLPNRCLKCNLIIPSEEIVCWACKSHINFTYNDFGGKGSFYQKVILKFPVNKAFSLMKYEKKELSQDIIHSLKYH
SIERVGKVLAHWVSENIDLSYQGIDILTSIPLHSKKQRERGYNQLHLFTKTLSQLQGIFYSHHLLKRNFYSKPQALKQKL
DREKIQNMFSVDEKVEGKHILLIDDVYTTGNTMSKAVWELLKGRDNQISILVLGLDD

Nucleotide


Download         Length: 654 bp        

>NTDB_id=577221 KPF23_RS08965 WP_038693798.1 1835575..1836228(-) (comF) [Riemerella anatipestifer strain XG19]
ATGTTTTTAGATTTTTTTCTACCAAATAGATGCCTAAAGTGTAATCTCATTATTCCTTCTGAGGAAATCGTGTGCTGGGC
TTGTAAATCTCATATCAATTTTACGTACAATGATTTTGGAGGGAAAGGGAGTTTTTATCAAAAAGTTATTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAATATGAGAAAAAAGAGCTGTCTCAAGATATTATACATTCCTTAAAATATCAT
TCTATAGAGCGAGTGGGTAAGGTGTTAGCCCATTGGGTTTCTGAAAATATAGATTTGTCTTATCAAGGGATAGATATATT
AACCAGCATACCGCTTCATTCTAAAAAGCAAAGAGAAAGAGGTTACAATCAGTTGCATTTGTTTACAAAGACGCTATCTC
AGCTACAGGGGATATTTTATTCTCACCATCTTCTTAAGAGAAACTTCTATTCTAAGCCTCAGGCTCTAAAACAAAAGTTG
GATAGGGAGAAAATACAAAATATGTTTTCTGTAGATGAGAAAGTAGAAGGTAAACATATCTTGCTTATAGATGATGTATA
TACCACAGGAAACACAATGAGTAAAGCAGTTTGGGAGCTACTAAAAGGAAGGGATAATCAGATAAGTATTTTGGTTTTAG
GTTTAGATGATTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

89.401

100

0.894