Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MP387_RS03965 Genome accession   NZ_CP094226
Coordinates   807355..809022 (+) Length   555 a.a.
NCBI ID   WP_125391279.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 802355..814022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS03935 (MP387_03935) udk 802947..803585 (+) 639 WP_001181369.1 uridine kinase -
  MP387_RS03940 (MP387_03940) xseA 803714..805054 (+) 1341 WP_242747830.1 exodeoxyribonuclease VII large subunit -
  MP387_RS03945 (MP387_03945) - 805032..805244 (+) 213 WP_000043226.1 exodeoxyribonuclease VII small subunit -
  MP387_RS03950 (MP387_03950) - 805241..806116 (+) 876 WP_242747832.1 polyprenyl synthetase family protein -
  MP387_RS03955 (MP387_03955) - 806109..806924 (+) 816 WP_242747834.1 TlyA family RNA methyltransferase -
  MP387_RS03960 (MP387_03960) - 806917..807348 (+) 432 WP_001034390.1 arginine repressor -
  MP387_RS03965 (MP387_03965) recN 807355..809022 (+) 1668 WP_125391279.1 DNA repair protein RecN Machinery gene
  MP387_RS03970 (MP387_03970) - 809023..809751 (+) 729 WP_242747836.1 metallophosphoesterase family protein -
  MP387_RS03975 (MP387_03975) lepA 809830..811653 (+) 1824 WP_242747837.1 translation elongation factor 4 -
  MP387_RS03980 (MP387_03980) - 811798..812421 (+) 624 WP_242747840.1 hypothetical protein -
  MP387_RS03985 (MP387_03985) dprA/cilB/dalA 812506..813354 (+) 849 WP_242747842.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62764.20 Da        Isoelectric Point: 4.5289

>NTDB_id=577212 MP387_RS03965 WP_125391279.1 807355..809022(+) (recN) [Streptococcus oralis strain 1648]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQELF
DEQGLEMGDEIIIRREILQNGRSVSRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDTVFLDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNEE
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDITKRLEDIIEDLDFDGNRLMQVENRLDLINTITRKYGGTV
DDVLLYFAKITDEYNLLTGNNLSSEDMEAELKKLEVNLVDLAGQLASARHDLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLTIEERVEEVAKMLAGENVTEAALTQARELLQTRMK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=577212 MP387_RS03965 WP_125391279.1 807355..809022(+) (recN) [Streptococcus oralis strain 1648]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAAGCGATTTCCCTCAATTTTGAAAAGGGTATGACTGTTTT
GACCGGGGAAACGGGTGCTGGAAAGTCTATCATTATCGACGCTATGAATCTCATGTTGGGGGCTCGTGCAACGACAGACG
TTATTCGTCACGGTGCGCCAAAAGCAGAGATTGAGGGGCTTTTCTCAGTTGAAAATAGTCGCCTTTTACAGGAACTTTTT
GATGAGCAAGGTTTGGAAATGGGTGATGAAATTATCATCCGGCGTGAAATTCTGCAAAATGGTCGTAGTGTTAGTCGCGT
GAATGGCCAGATGGTCAATCTTTCTGTCTTGCGTGCTATTGGGCAACACCTTGTGGATATCCATGGTCAGCATGACCAAG
AGGAGTTAATGCGTCCTCAACTGCACATCCAGATGTTGGATGAGTTTGGTGATACTGTGTTCTTGGACTTGAAGGAGACC
TATCAGACGAGCTTTGATGCCTATCGCAAAATGCGCAAGCAGGTTTTGGAAGTCAAGAAAAACCAGCAGGAACATAAGGC
TCGTATTGAGATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCGAACTTACAGGCTGGTGAAGACTTGGCTCTCAACC
AAGAACGAGATAAACTCCTCAATCATAAGAATATTGCGGATACGCTAACCAATGCCTACAGTATGTTGGACAATGAGGAA
TTCTCCAGTCTTGCTAATGTCCGTTCAGCTATGAATGACATGGAAAGTGTTGAAGAATATGACCCTGAATACCGTGAAAT
TTCAAGTTCTCTGTCTGAGACCTACTATGTTTTAGAAGATATTACAAAGCGTTTGGAAGATATTATTGAGGACTTAGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGCTTAGACCTTATAAATACTATTACCCGCAAGTACGGTGGGACTGTG
GACGATGTCCTGCTTTATTTTGCCAAGATTACGGATGAGTACAATCTCTTGACTGGAAATAATCTTTCTTCTGAAGACAT
GGAAGCAGAGCTCAAGAAATTGGAAGTTAATCTTGTCGACTTGGCAGGTCAGCTTGCATCTGCTCGTCATGATTTGGCTC
AGCAGCTTGAGGCAGAGATTAAACAAGAACTGCAAGACCTCTATATGGAGAAGGCACAATTTCAGGTTCGCTTTAGCAAG
GGCAAATTTAGTCGTGAGGGGAATGAAACGGTCGAGTTTTACATTTCCACCAACCCAGGTGAGGACTTTAAGCCTTTGGT
CAAAGTTGCATCTGGTGGGGAATTATCCCGCCTCATGCTAGCTATTAAATCCGCCTTTTCTCGTAAGGAAGGTAAGACCA
GTATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTAGCCCAGGCTATTGCTCAAAAGATTCATAAGATTGGC
CAGCATGGTCAGGTTCTTGCTATCTCTCACCTTCCACAAGTGATTGCCATCGCGGATTATCAATTCTTTATTGAGAAGAT
TAGTGATGAGCATTCTACGGTGTCGACGGTTCGTCTCTTGACTATAGAAGAGCGAGTAGAAGAAGTAGCTAAGATGTTGG
CTGGGGAAAATGTAACTGAAGCTGCCCTTACCCAAGCCAGAGAATTATTGCAAACGAGGATGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.134

100

0.441