Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   MP387_RS01470 Genome accession   NZ_CP094226
Coordinates   290935..291648 (-) Length   237 a.a.
NCBI ID   WP_242747166.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 285935..296648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS01470 (MP387_01470) treR 290935..291648 (-) 714 WP_242747166.1 trehalose operon repressor Regulator
  MP387_RS01475 (MP387_01475) treP 291833..293800 (+) 1968 WP_242747168.1 PTS system trehalose-specific EIIBC component -
  MP387_RS01480 (MP387_01480) treC 293864..295495 (+) 1632 WP_242747169.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27740.80 Da        Isoelectric Point: 7.1434

>NTDB_id=577195 MP387_RS01470 WP_242747166.1 290935..291648(-) (treR) [Streptococcus oralis strain 1648]
MKKYQQLFKQIQKTIQNETYAIGDFLPSEHELMNQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVQELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELVPNLTRQIAEQSIY
SYIEDDLKLHIDYAQKEITIDHTGDRDKILMDIGKDPYVVSIKSKVYLQDGHQFQFTESRHKLEKFHFVDFAKRHPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=577195 MP387_RS01470 WP_242747166.1 290935..291648(-) (treR) [Streptococcus oralis strain 1648]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAAAAACCATTCAAAACGAGACCTACGCTATCGGAGATTTCCTCCC
CAGTGAGCACGAACTCATGAATCAGTATCAGGTGAGCCGTGACACCGTCCGAAAAGCTCTGTCCCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGGGGGCAAGGTTCCCAAGTCGTCAAAGAAGAAACGGTCAATTTCCCTGTCTCTAACCTAACC
AGCTACCAAGAACTGGTTCAGGAACTTGGGCTGCGCTCAAAAACCAATGTCGTCAGTCTGGACAAGATCATTATCGATAA
AAAGTCCTCACTGATAACCGGCTTCCCAGAGTTTCGGATGGTGTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATTTGG
TATCGGTTCTAGATACGGACTATCTGGATATGGAACTGGTCCCAAATCTCACTCGCCAAATCGCTGAGCAGTCTATCTAC
TCGTATATAGAGGACGACCTCAAACTCCATATTGATTATGCTCAGAAAGAAATCACCATTGACCACACGGGTGATCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCAATCAAGTCAAAAGTCTATCTCCAAGACGGGCACCAGT
TCCAATTCACCGAAAGTCGCCATAAATTAGAAAAATTTCACTTTGTTGACTTTGCCAAAAGACATCCGAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

57.872

99.156

0.574