Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MP387_RS00895 Genome accession   NZ_CP094226
Coordinates   173186..175162 (+) Length   658 a.a.
NCBI ID   WP_242746989.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 168186..180162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS00870 (MP387_00870) - 168875..170065 (+) 1191 WP_242746978.1 acetate kinase -
  MP387_RS00875 (MP387_00875) rnpA 170215..170586 (+) 372 WP_000748120.1 ribonuclease P protein component -
  MP387_RS00880 (MP387_00880) - 170561..171388 (+) 828 WP_242746981.1 membrane protein insertase YidC -
  MP387_RS00885 (MP387_00885) jag 171403..172389 (+) 987 WP_242746983.1 RNA-binding cell elongation regulator Jag/EloR -
  MP387_RS00890 (MP387_00890) - 172445..173068 (+) 624 WP_242746984.1 ribonuclease P -
  MP387_RS00895 (MP387_00895) recP/tkt 173186..175162 (+) 1977 WP_242746989.1 transketolase Machinery gene
  MP387_RS00900 (MP387_00900) yajC 175291..175611 (+) 321 WP_070568166.1 preprotein translocase subunit YajC -
  MP387_RS00905 (MP387_00905) - 175659..176102 (+) 444 WP_242746993.1 low molecular weight protein-tyrosine-phosphatase -
  MP387_RS00910 (MP387_00910) - 176089..176502 (+) 414 WP_000413194.1 MORN repeat-containing protein -
  MP387_RS00915 (MP387_00915) adhE 176798..179449 (+) 2652 WP_198464993.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 70796.44 Da        Isoelectric Point: 4.7578

>NTDB_id=577185 MP387_RS00895 WP_242746989.1 173186..175162(+) (recP/tkt) [Streptococcus oralis strain 1648]
MSNLSVNAIRFLGIDAINKANSGHPGVVMGAAPMAYSLFTKQLRINPAQPNWINRDRFILSAGHGSMLLYALLHLSGFED
VNMDEVKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNREGYNIFDHYTYVICGDGDLMEG
VSSEAASYAGLQKLDKLVVLYDSNDINLDGETKDSFTESVRDRYNAYGWHTALVEDGTDLEAIHAAIEAAKASGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGADETAATRQALGWDYEPFEIPAEVYADFKENVADRGASAYQAWTKLVADYKEAHPE
LAAEVEAIIDGRDPVEVTPADFPALENGFSQATRNSSQDALNVVAAKLPTFLGGSADLAHSNMTYIKTDGLQDDANRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPVEHLAGLR
AMPNLNVFRPADARETQAAWYLAVTSEKIPTALVLTRQNLTVEEGTDFGKVAKGAYVVYENAADFDTILIATGSEVNLAV
AAAKELAGQGAKVRVVSMPSTDVFDAQDAAYKEEILPNAVRRRVAVEMGATQNWYKYVGLDGAVLGIDTFGASAPAPKVL
AEYGFTVENLVKVVQNLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=577185 MP387_RS00895 WP_242746989.1 173186..175162(+) (recP/tkt) [Streptococcus oralis strain 1648]
ATGTCAAATCTATCTGTTAATGCAATTCGTTTTCTAGGTATTGACGCCATCAACAAAGCAAACTCAGGTCACCCAGGGGT
GGTTATGGGGGCTGCTCCTATGGCCTATAGCCTCTTTACAAAGCAACTTCGTATCAATCCAGCTCAACCAAACTGGATCA
ACCGCGATCGCTTTATTCTTTCAGCAGGACACGGCTCTATGCTTCTTTATGCCCTTCTTCACCTTTCTGGTTTTGAAGAT
GTTAACATGGATGAAGTCAAGAACTTCCGCCAATGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGGCATACTGCAGG
GGTTGACGCTACAACTGGTCCTCTAGGACAAGGGATTTCTACTGCTACTGGTTTTGCCCAAGCAGAACGTTTCCTTGCAG
CGAAGTATAACCGCGAAGGCTATAATATCTTTGACCACTATACTTATGTGATCTGTGGAGATGGAGACTTGATGGAAGGT
GTCTCAAGTGAGGCAGCTTCATACGCAGGCTTGCAAAAACTCGACAAGTTGGTGGTTCTTTATGATTCAAATGACATCAA
CTTGGATGGTGAGACAAAAGATTCCTTTACAGAAAGTGTTCGTGACCGTTACAATGCTTACGGTTGGCATACAGCCTTGG
TTGAAGATGGAACAGACTTGGAAGCAATCCATGCGGCTATTGAAGCAGCTAAAGCTTCAGGAAAACCATCTTTGATTGAA
GTCAAGACTGTGATTGGATACGGTTCTCCAAACAAACAAGGAACTAATGCCGTACACGGTGCTCCTCTTGGAGCAGATGA
AACTGCAGCAACTCGTCAAGCCCTCGGTTGGGACTATGAACCATTTGAAATCCCAGCTGAAGTATATGCTGATTTCAAGG
AAAATGTTGCAGATCGTGGCGCATCAGCTTATCAAGCTTGGACTAAATTAGTTGCAGATTATAAAGAAGCGCATCCAGAA
CTGGCTGCAGAAGTAGAAGCCATCATCGACGGACGTGATCCAGTTGAAGTGACTCCAGCAGACTTCCCAGCCTTAGAAAA
TGGTTTCTCTCAAGCCACTCGTAATTCAAGTCAAGATGCTTTGAACGTTGTAGCTGCTAAATTGCCAACTTTCTTAGGTG
GTTCAGCTGACCTTGCTCACTCAAACATGACTTACATCAAAACGGATGGACTTCAAGATGATGCTAATCGCTTGAACCGC
AATATTCAGTTTGGTGTTCGTGAATTTGCAATGGGAACGATCTTGAACGGAATGGCCCTTCACGGTGGACTTCGTGTTTA
TGGTGGTACTTTCTTTGTCTTCTCTGACTATGTGAAAGCAGCTGTCCGCTTGTCAGCCTTGCAAGGACTTCCTGTGACTT
ATGTCTTTACCCACGATTCAATCGCAGTTGGTGAAGATGGTCCAACTCACGAACCAGTTGAACACCTAGCAGGTCTTCGT
GCTATGCCAAATCTCAATGTTTTCCGCCCAGCAGATGCGCGTGAAACTCAAGCAGCTTGGTACCTTGCAGTGACAAGCGA
AAAGATACCAACTGCCCTTGTCTTGACACGTCAAAACTTGACTGTTGAAGAGGGAACAGACTTTGGCAAGGTTGCTAAAG
GTGCCTATGTTGTCTATGAAAATGCAGCTGACTTTGACACTATCTTGATTGCAACAGGTTCTGAGGTCAATCTCGCTGTC
GCAGCTGCCAAAGAATTGGCTGGTCAAGGTGCAAAAGTCCGCGTAGTCAGCATGCCATCTACAGATGTCTTTGATGCACA
AGATGCAGCTTATAAGGAAGAAATCCTTCCAAATGCAGTACGTCGTCGTGTTGCAGTCGAAATGGGAGCAACTCAAAACT
GGTACAAATATGTTGGTCTTGATGGTGCAGTTCTCGGTATTGATACCTTTGGAGCATCTGCCCCAGCACCAAAAGTATTG
GCAGAGTACGGATTTACAGTTGAAAATCTAGTCAAAGTTGTTCAAAACTTGAAATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(544-649)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

80.518

99.848

0.804