Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MP387_RS00160 Genome accession   NZ_CP094226
Coordinates   29642..30412 (+) Length   256 a.a.
NCBI ID   WP_125826015.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24642..35412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS00135 (MP387_00135) - 25055..25549 (+) 495 WP_007522536.1 carbonic anhydrase -
  MP387_RS00140 (MP387_00140) - 25763..26731 (+) 969 WP_000010174.1 ribose-phosphate diphosphokinase -
  MP387_RS00145 (MP387_00145) - 26851..27288 (+) 438 WP_000076495.1 CoA-binding protein -
  MP387_RS00150 (MP387_00150) - 27315..28325 (-) 1011 WP_242746685.1 YeiH family protein -
  MP387_RS00155 (MP387_00155) - 28476..29645 (+) 1170 WP_242746687.1 pyridoxal phosphate-dependent aminotransferase -
  MP387_RS00160 (MP387_00160) recO 29642..30412 (+) 771 WP_125826015.1 DNA repair protein RecO Machinery gene
  MP387_RS00165 (MP387_00165) plsX 30409..31401 (+) 993 WP_227232162.1 phosphate acyltransferase PlsX -
  MP387_RS00170 (MP387_00170) - 31407..31643 (+) 237 WP_000136435.1 acyl carrier protein -
  MP387_RS00175 (MP387_00175) - 31958..32134 (+) 177 WP_000180837.1 hypothetical protein -
  MP387_RS00180 (MP387_00180) - 32147..32338 (+) 192 WP_083321223.1 bacteriocin immunity protein -
  MP387_RS00185 (MP387_00185) - 32367..32537 (+) 171 WP_070837635.1 H354_08695 family bacteriocin-like peptide -
  MP387_RS00190 (MP387_00190) comA 32856..35009 (+) 2154 WP_242746689.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29765.16 Da        Isoelectric Point: 4.9019

>NTDB_id=577172 MP387_RS00160 WP_125826015.1 29642..30412(+) (recO) [Streptococcus oralis strain 1648]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDEKRCHLNPNIPYLLNQFQAIDFETLETISLKAEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=577172 MP387_RS00160 WP_125826015.1 29642..30412(+) (recO) [Streptococcus oralis strain 1648]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAGGATGACAAGCTAGTCAAGATCTT
TACCGAGCAAGCGGGCAAGCGCATGTTTTTCGTCAAACACGCTGGCCAGTCCAAACTAGCTCCTGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGTATCAATGATGATGGGCTTAGCTACATTGAGGACTATCACGAGGTGATGACCTTTCCC
AAGATTAATAGTGATCTCTTTGTCATGGCCTATGCAACCTATGTGGCTGCTCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCATAGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGGATCAGCCTTAATTTTAATGAGTGTGTCTTTTGCCATCGGGTGGGT
CAGGCCTTTGACTTTTCTTTTAAATATGGAGCCTGCCTTTGCCCAGAGCATTATCATGAAGACGAGAAACGTTGCCATCT
GAATCCCAATATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAAACCTTGGAGACCATTTCGCTTAAGGCCG
AAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTCTACGAAGAGTATGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

97.266

100

0.973