Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPF93_RS05350 Genome accession   NZ_CP094178
Coordinates   1113648..1115573 (+) Length   641 a.a.
NCBI ID   WP_245073323.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1108648..1120573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF93_RS05325 (MPF93_05325) hofB 1108849..1110288 (-) 1440 WP_245073317.1 outer membrane beta-barrel protein HofB -
  MPF93_RS05330 (MPF93_05330) pyrB 1110581..1111504 (-) 924 WP_180648764.1 aspartate carbamoyltransferase -
  MPF93_RS05335 (MPF93_05335) - 1111571..1112086 (+) 516 WP_000523557.1 hypothetical protein -
  MPF93_RS05340 (MPF93_05340) - 1112086..1112793 (+) 708 WP_245073319.1 TlyA family RNA methyltransferase -
  MPF93_RS05345 (MPF93_05345) - 1112759..1113601 (+) 843 WP_245073321.1 bifunctional riboflavin kinase/FAD synthetase -
  MPF93_RS05350 (MPF93_05350) recP/tkt 1113648..1115573 (+) 1926 WP_245073323.1 transketolase Machinery gene
  MPF93_RS05355 (MPF93_05355) - 1115570..1117906 (+) 2337 WP_245073325.1 PD-(D/E)XK nuclease family protein -
  MPF93_RS05360 (MPF93_05360) - 1117903..1120455 (+) 2553 WP_245073327.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70451.68 Da        Isoelectric Point: 6.5429

>NTDB_id=577154 MPF93_RS05350 WP_245073323.1 1113648..1115573(+) (recP/tkt) [Helicobacter pylori strain Hpfe060]
MRLSNADLERLKSMANALRFLCADMIDKANSGHPGVCLGLADVMVVLSLYLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDENFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKTKE
KIHALKNFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPVEQLSHLRALPNFYAFRPS
DAFENTACMQIALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALEGAKMLERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=577154 MPF93_RS05350 WP_245073323.1 1113648..1115573(+) (recP/tkt) [Helicobacter pylori strain Hpfe060]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCGAATGCACTTCGCTTTTTGTGCGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGACTAGCCGATGTGATGGTGGTTTTAAGCTTGTACTTAAACCTAA
ACCCCACTAACCCTAAATGGCTCAACAGGGATAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGTTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATTACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGTGCTTCTTTAGCCGGGCACCTCAACCTAAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGTGCTATTAATATTAGTTTCAGCGAACAGGTCAAGATGCGGTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCTTAAA
TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAACTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAACAAAAGAA
AAGATCCATGCGTTGAAGAATTTTGATTTTAGCGCCATCAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGAAGCGCAGATTTAGCCCCGT
CTAACAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCCATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGTGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGTGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACACATGACAGCATTGGCGTAGGCG
AAGATGGGGCCACGCACCAGCCTGTAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTACGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAATAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGTGAAGTCTCTTTGGCTTTAGAGGGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGCACCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAACTCTTTAAAGGTAAAGT
TTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.475

100

0.421