Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MPG60_RS03400 Genome accession   NZ_CP094177
Coordinates   696992..697873 (-) Length   293 a.a.
NCBI ID   WP_245085587.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe062     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 691992..702873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG60_RS03365 (MPG60_03365) mobA 692651..693256 (-) 606 WP_245085581.1 molybdenum cofactor guanylyltransferase MobA -
  MPG60_RS03370 (MPG60_03370) - 693342..694177 (+) 836 Protein_646 radical SAM protein -
  MPG60_RS03375 (MPG60_03375) - 694292..694486 (+) 195 WP_231232137.1 hypothetical protein -
  MPG60_RS03380 (MPG60_03380) - 694462..695281 (+) 820 Protein_648 hypothetical protein -
  MPG60_RS07595 - 695376..695646 (+) 271 Protein_649 hypothetical protein -
  MPG60_RS03390 (MPG60_03390) - 695657..696650 (+) 994 Protein_650 glycine zipper family protein -
  MPG60_RS03395 (MPG60_03395) - 696669..696983 (+) 315 WP_245085585.1 YkgJ family cysteine cluster protein -
  MPG60_RS03400 (MPG60_03400) pilA 696992..697873 (-) 882 WP_245085587.1 signal recognition particle-docking protein FtsY Machinery gene
  MPG60_RS03405 (MPG60_03405) - 697880..698437 (-) 558 WP_245085589.1 hypothetical protein -
  MPG60_RS03410 (MPG60_03410) - 698535..699209 (+) 675 WP_280636021.1 5-formyltetrahydrofolate cyclo-ligase -
  MPG60_RS03415 (MPG60_03415) rny 699187..700698 (+) 1512 WP_245085712.1 ribonuclease Y -
  MPG60_RS03420 (MPG60_03420) - 700699..702015 (-) 1317 WP_245085714.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32668.96 Da        Isoelectric Point: 8.0359

>NTDB_id=577108 MPG60_RS03400 WP_245085587.1 696992..697873(-) (pilA) [Helicobacter pylori strain Hpfe062]
MFNFFKKIVNKIKGEEVKEKKRQSVPKEELEEILIGFDIQYDLIESLLSHLGDLITPKQLEVALLRFVRGESYYDKTRLK
TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKERSDPSSLAYNT
IESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTK
LDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=577108 MPG60_RS03400 WP_245085587.1 696992..697873(-) (pilA) [Helicobacter pylori strain Hpfe062]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAAATTAAGGGTGAAGAGGTTAAAGAAAAAAAACGCCAAAGCGTTCCTAA
AGAGGAATTAGAAGAAATTTTGATTGGCTTTGACATTCAATACGATTTGATAGAGAGCTTGCTAAGTCATTTAGGCGATT
TGATTACGCCCAAGCAATTAGAAGTCGCTTTGTTGCGTTTCGTGCGTGGGGAAAGCTATTATGATAAAACCCGTCTAAAA
ACCATCACCACAAAACCCTTAGTGCATTTAATCGTAGGGGTTAATGGGGCGGGCAAAACCACCACGATCGCCAAACTCGC
CAAGCTCTCTTTAAAACAACATAAAAAAGCGCTTTTAGGGGCAGGCGATACCTTTAGAGCGGCCGCAGTCAAACAGCTCC
AGTTATGGGGCGAAAAGCTTAACATTCAAGTCATTAGCGCTAAAGAAAGGAGCGATCCAAGCTCTCTAGCTTATAACACC
ATAGAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGTTACACAACCAGACCAACCTTAA
AAACGAGCTTTCTAAAATCGCGCGCACCTGCTCTAAAGTTTTAAAAGACGCCCCCTTTTATAAATTCCTTATTTTAGACG
GCACGCAAGGGAGTTCTGGGCTCACTCAAGCCAAGATTTTCCATGAGACTTTGGCGTTAGACGGCGTGATTATGACTAAG
CTTGATGGCACTTCTAAAGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTATTTAGGAATGGG
CGAAAAAGAAGACGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGACTTGGTTGATGCGGTGTTTGTGGAACAAT
AA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(87-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.075

91.126

0.365