Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CNZW441b_RS05710 Genome accession   NZ_CP076657
Coordinates   1120273..1121220 (+) Length   315 a.a.
NCBI ID   WP_216681291.1    Uniprot ID   -
Organism   Campylobacter novaezeelandiae strain W441b     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115273..1126220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZW441b_RS05690 (CNZW441b_1134) galE 1116482..1117468 (-) 987 WP_131164127.1 UDP-glucose 4-epimerase GalE -
  CNZW441b_RS05695 (CNZW441b_1135) - 1117513..1118307 (-) 795 WP_131164128.1 3'-5' exonuclease -
  CNZW441b_RS05700 (CNZW441b_1136) waaC 1118371..1119393 (+) 1023 WP_131165689.1 lipopolysaccharide heptosyltransferase I -
  CNZW441b_RS05705 (CNZW441b_1137) - 1119383..1120276 (+) 894 WP_216681290.1 lipid A biosynthesis lauroyl acyltransferase -
  CNZW441b_RS05710 (CNZW441b_1138) waaF 1120273..1121220 (+) 948 WP_216681291.1 lipopolysaccharide heptosyltransferase II Regulator
  CNZW441b_RS05715 (CNZW441b_1139) - 1121206..1122015 (-) 810 WP_216681292.1 glycosyltransferase family 2 protein -
  CNZW441b_RS05720 - 1122100..1122258 (+) 159 WP_216681293.1 hypothetical protein -
  CNZW441b_RS05725 - 1122221..1122826 (+) 606 WP_216681294.1 hypothetical protein -
  CNZW441b_RS05730 - 1122768..1123598 (+) 831 WP_216681295.1 hypothetical protein -
  CNZW441b_RS05735 (CNZW441b_1141) - 1123703..1124380 (-) 678 WP_131186672.1 acylneuraminate cytidylyltransferase family protein -
  CNZW441b_RS05740 (CNZW441b_1142) neuC 1124468..1125586 (-) 1119 WP_216681296.1 UDP-N-acetylglucosamine 2-epimerase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 36190.80 Da        Isoelectric Point: 10.2917

>NTDB_id=577085 CNZW441b_RS05710 WP_216681291.1 1120273..1121220(+) (waaF) [Campylobacter novaezeelandiae strain W441b]
MKIFINLPTWLGDAVMSSAAIYALLEKFPKAQIIFYGSFVSTELFKNIKNSKIIIEDKKHRYLNILKQRSLIGECDIAIS
FRSAFSSKIILNLIKSKRRFYFNKRQNENEHQVLKYLYFIEKSFNFKANSTQLKLPILPKYKCNITLKDDKKILALNPGA
HYGNAKRWEASYFASVAKEFAKTHKILIFGIKSEQEICNNIENILKKDGIRVKNLCSKTSISSLCKNIAFCDLFITNDSG
AMHIAAVYKIKTVAIFGPTKFNQTSPWQNENAKIVHLNLSCMPCMQKTCPLKHHKCMKDLKPELVIKEAKKLLGY

Nucleotide


Download         Length: 948 bp        

>NTDB_id=577085 CNZW441b_RS05710 WP_216681291.1 1120273..1121220(+) (waaF) [Campylobacter novaezeelandiae strain W441b]
GTGAAAATTTTTATAAATCTTCCTACTTGGCTAGGCGATGCTGTAATGTCTAGCGCGGCTATTTATGCTTTGCTTGAAAA
ATTTCCTAAAGCTCAAATTATTTTTTATGGATCCTTTGTAAGTACAGAGCTTTTTAAAAATATAAAAAATTCTAAAATCA
TTATAGAAGATAAAAAACATAGATATTTAAATATCTTAAAACAAAGATCTCTCATAGGAGAATGTGATATTGCGATCTCA
TTTAGATCTGCATTTTCGAGTAAAATTATTTTAAATTTGATTAAATCCAAAAGAAGATTTTACTTTAATAAAAGACAAAA
TGAAAACGAACATCAAGTTTTAAAATACCTATATTTTATAGAAAAAAGTTTTAATTTTAAAGCAAATTCAACGCAATTAA
AACTTCCCATTTTACCAAAATATAAATGTAATATCACCTTAAAAGATGATAAAAAAATTCTAGCCTTAAATCCAGGTGCT
CATTATGGTAATGCAAAAAGATGGGAGGCTAGTTATTTTGCTAGTGTTGCAAAAGAATTTGCTAAAACACATAAAATTCT
TATCTTTGGAATAAAAAGTGAACAAGAAATTTGTAATAACATAGAAAATATTTTAAAAAAAGATGGCATTAGAGTTAAAA
ATTTATGTTCTAAAACAAGTATAAGTAGTCTTTGTAAAAATATAGCATTTTGTGATTTATTTATCACTAACGATAGTGGT
GCTATGCACATAGCAGCTGTATATAAGATAAAAACTGTAGCCATTTTTGGACCTACAAAATTTAATCAAACATCGCCTTG
GCAAAATGAAAATGCTAAAATTGTTCATTTAAATTTAAGCTGTATGCCTTGTATGCAAAAAACTTGTCCCCTAAAACATC
ACAAATGCATGAAAGATCTAAAACCTGAACTTGTGATAAAAGAGGCTAAAAAACTACTTGGCTATTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(102-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.924

99.683

0.657