Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   CNZW441b_RS05385 Genome accession   NZ_CP076657
Coordinates   1052360..1052827 (-) Length   155 a.a.
NCBI ID   WP_131163510.1    Uniprot ID   A0A4Q9JT07
Organism   Campylobacter novaezeelandiae strain W441b     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1047360..1057827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZW441b_RS05375 (CNZW441b_1071) - 1049111..1050484 (+) 1374 WP_131166282.1 DUF2972 domain-containing protein -
  CNZW441b_RS05380 (CNZW441b_1072) - 1050525..1052363 (-) 1839 WP_131186823.1 primosomal protein N' -
  CNZW441b_RS05385 (CNZW441b_1073) Cj0683 1052360..1052827 (-) 468 WP_131163510.1 type II secretion system protein Machinery gene
  CNZW441b_RS05390 (CNZW441b_1074) - 1052817..1053071 (-) 255 WP_131163511.1 hypothetical protein -
  CNZW441b_RS05395 (CNZW441b_1075) - 1053061..1053291 (-) 231 WP_131163512.1 hypothetical protein -
  CNZW441b_RS05400 (CNZW441b_1076) uvrB 1053440..1055413 (+) 1974 WP_216681282.1 excinuclease ABC subunit UvrB -
  CNZW441b_RS08150 - 1055617..1055880 (+) 264 WP_244985433.1 hypothetical protein -
  CNZW441b_RS05405 (CNZW441b_1077) - 1056076..1057599 (+) 1524 WP_244985449.1 sulfatase-like hydrolase/transferase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17937.06 Da        Isoelectric Point: 8.4717

>NTDB_id=577083 CNZW441b_RS05385 WP_131163510.1 1052360..1052827(-) (Cj0683) [Campylobacter novaezeelandiae strain W441b]
MKFKRAFTLLELIFVILIIGILASLALPFLSQNKNDAKLLKAKIEYQMISSSLALMRNEASLKQVAYTSVLDNAKFFKEN
EKLFFCEQTISCEDKNCCSFSLFNLPLYSSKDSWIKISFNSYRFFLNSKQSIDFVYDPKEGILKCVDNQLCKEFI

Nucleotide


Download         Length: 468 bp        

>NTDB_id=577083 CNZW441b_RS05385 WP_131163510.1 1052360..1052827(-) (Cj0683) [Campylobacter novaezeelandiae strain W441b]
ATGAAATTTAAAAGAGCTTTTACCTTGCTTGAGCTTATATTTGTTATTTTGATTATAGGAATTTTAGCAAGTTTAGCTCT
TCCTTTTTTATCCCAAAATAAAAATGATGCAAAATTACTAAAAGCTAAGATTGAATATCAAATGATTTCTTCAAGTTTGG
CTTTAATGAGAAACGAAGCTTCTTTAAAACAGGTAGCTTATACTTCAGTGCTTGATAATGCAAAATTTTTTAAAGAAAAT
GAAAAATTATTTTTTTGTGAACAAACCATATCATGTGAAGATAAAAATTGTTGTTCTTTTTCGCTTTTTAATCTTCCTTT
GTATTCAAGTAAAGATTCTTGGATAAAAATATCTTTTAATTCTTATCGTTTTTTTTTAAATTCAAAACAAAGCATAGATT
TTGTTTATGATCCTAAAGAGGGTATTTTAAAATGTGTCGATAATCAATTATGTAAAGAATTTATATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9JT07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.669

97.419

0.484