Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LEUCM_RS08780 Genome accession   NZ_AP017929
Coordinates   1752668..1754371 (-) Length   567 a.a.
NCBI ID   WP_056936394.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1747668..1759371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS08755 (LACBS_01740) coaBC 1749687..1750904 (-) 1218 WP_016264860.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  LEUCM_RS08760 (LACBS_01741) rpoZ 1750993..1751250 (-) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  LEUCM_RS08765 (LACBS_01742) gmk 1751255..1751866 (-) 612 WP_011374394.1 guanylate kinase -
  LEUCM_RS08770 (LACBS_01743) - 1751939..1752163 (-) 225 WP_025015870.1 YdbC family protein -
  LEUCM_RS08775 (LACBS_01744) - 1752286..1752609 (+) 324 WP_025015871.1 hypothetical protein -
  LEUCM_RS08780 (LACBS_01745) recN 1752668..1754371 (-) 1704 WP_056936394.1 DNA repair protein RecN Machinery gene
  LEUCM_RS08785 (LACBS_01746) argR 1754421..1754873 (-) 453 WP_025015872.1 arginine repressor -
  LEUCM_RS08790 (LACBS_01747) - 1754953..1755783 (-) 831 WP_025015873.1 TlyA family RNA methyltransferase -
  LEUCM_RS08795 (LACBS_01748) - 1755792..1756664 (-) 873 WP_025015874.1 polyprenyl synthetase family protein -
  LEUCM_RS08800 (LACBS_01749) - 1756664..1756876 (-) 213 Protein_1700 exodeoxyribonuclease VII small subunit -
  LEUCM_RS08805 (LACBS_01750) xseA 1756895..1758244 (-) 1350 WP_056936393.1 exodeoxyribonuclease VII large subunit -
  LEUCM_RS08810 (LACBS_01751) folD 1758237..1759088 (-) 852 WP_082267624.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63221.21 Da        Isoelectric Point: 4.7304

>NTDB_id=57708 LEUCM_RS08780 WP_056936394.1 1752668..1754371(-) (recN) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTLPENGTTAALL
AEYGIEHDDQTILLQRDLALNGHNVCRVNGHLVNTTTLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTTLASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILAYGAQITKELQAMQATEANASELEQQFEQQQAQLLQEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
TVDNQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=57708 LEUCM_RS08780 WP_056936394.1 1752668..1754371(-) (recN) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACTGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTACTCGCTGGTGGTCGGGGGTCACAGGATT
TCATCCGAACCGGTGCGAAAAAAGCGACGTTAGAGGGCTTGTTCACATTACCCGAAAACGGCACGACTGCCGCGCTTTTA
GCTGAATATGGGATTGAACACGATGATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
CGTTAATGGGCATCTGGTCAATACCACGACGCTTAAAAAGATTGGAGAAACATTAGTTGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAACCTTGGCGAGTGCTAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCGTTGAAGAAGAAACAACAAAATGAGCAGGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCCGCGCAATTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGGATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAA
GAAGGCAACGCGCTAGATCAAATCGCGATTGCGATGAATCAGATGCAAGAAATCGCGGAATTAGATCCTGAATTCAAAAG
AATTGCCGATAATCTACAAACAGGCTATTACACACTGCAAGATAGCGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAAGCGCGCTTGGATGAAATTGAACAGCGCTTAGAAACGATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATCTTAGCTTATGGGGCGCAAATTACCAAAGAATTGCAAGCGATGCAGGCCACAGAAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGCAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCTGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCTCTCTATATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ACGGTTGATAATCAGCAATTTATGCGCAGCGGTCGGGACAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCGCTTGCCAAGACTGCTTCTGGTGGGGAATTATCCCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTTGATGAAGTTGATACTGGGGTCAGTGGGCGTGTTGCGCAAGCAATTGCCAATAAAATT
AGCGAAATTGCCCAACACTCACAAGTCCTCTGTATTACGCATTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAACAAAACCGCACAGAAACATCAATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.819

100

0.464

Multiple sequence alignment