Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CNZW441b_RS03620 Genome accession   NZ_CP076657
Coordinates   684422..685375 (+) Length   317 a.a.
NCBI ID   WP_279586054.1    Uniprot ID   -
Organism   Campylobacter novaezeelandiae strain W441b     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 679422..690375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZW441b_RS03590 (CNZW441b_0712) - 680361..681629 (-) 1269 WP_131166127.1 M20/M25/M40 family metallo-hydrolase -
  CNZW441b_RS03595 (CNZW441b_0713) - 681685..682215 (+) 531 WP_131166126.1 thermonuclease family protein -
  CNZW441b_RS03600 (CNZW441b_0714) - 682231..682401 (+) 171 WP_166683066.1 hypothetical protein -
  CNZW441b_RS03605 (CNZW441b_0715) - 682402..682977 (-) 576 WP_131166125.1 hypothetical protein -
  CNZW441b_RS03610 (CNZW441b_0716) cmoB 682980..683855 (-) 876 WP_131166124.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  CNZW441b_RS03615 (CNZW441b_0717) rpsO 683931..684203 (-) 273 WP_131163377.1 30S ribosomal protein S15 -
  CNZW441b_RS03620 (CNZW441b_0718) ceuB 684422..685375 (+) 954 WP_279586054.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  CNZW441b_RS03625 (CNZW441b_0719) - 685368..686306 (+) 939 WP_131163376.1 iron chelate uptake ABC transporter family permease subunit -
  CNZW441b_RS03630 (CNZW441b_0720) - 686303..687058 (+) 756 WP_131166122.1 ATP-binding cassette domain-containing protein -
  CNZW441b_RS03635 (CNZW441b_0721) - 687079..688047 (+) 969 WP_131166121.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35272.87 Da        Isoelectric Point: 9.5204

>NTDB_id=577077 CNZW441b_RS03620 WP_279586054.1 684422..685375(+) (ceuB) [Campylobacter novaezeelandiae strain W441b]
MFSCFIKLKVLLSLLFIFSIVSVFIGVKDISLFSLNNEDLELLFITRIPRIIAIIITGMSLGICGLIMQQITQNKFVSPT
TAGTMDCARFGILISLVFFNTYSFLFQTLIACIFTMLGSIVFIQILRKIKFKDSIFIPLVGLMFGGIINSLTTFFAYSLN
YIQNIQGWLQGSFANVMQGNYELIYISLPMLVVAYIFANKITIVGMGKEVCINLGISYNFVLGLGLFIVSIITSVIVLTV
GVIPFLGLIIPNIISIYKGDNLKRNLSYIALSGALFLLICDIFARIIIFPFEMPISIVAGVFGSLIFIWILLKRKNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=577077 CNZW441b_RS03620 WP_279586054.1 684422..685375(+) (ceuB) [Campylobacter novaezeelandiae strain W441b]
TTGTTCAGTTGCTTTATAAAACTAAAGGTTTTATTATCATTACTTTTTATTTTTTCTATAGTAAGTGTCTTTATAGGAGT
AAAAGATATTTCTTTATTCTCTTTAAATAACGAAGATTTGGAACTTTTGTTTATAACAAGAATTCCAAGAATTATAGCCA
TAATCATCACAGGAATGAGTTTGGGAATTTGTGGTCTTATTATGCAGCAGATTACTCAAAATAAATTTGTTTCTCCAACC
ACTGCTGGAACTATGGATTGTGCAAGATTTGGAATTTTAATCTCTTTAGTATTTTTCAATACTTATTCTTTTTTATTTCA
AACTTTAATTGCTTGTATTTTTACTATGCTTGGAAGTATTGTTTTTATACAAATTTTAAGAAAAATTAAATTCAAAGATA
GTATTTTCATACCTCTGGTAGGATTAATGTTTGGCGGGATTATTAATTCTTTAACAACTTTTTTTGCTTATAGTTTAAAT
TATATCCAAAATATTCAAGGATGGCTACAGGGGAGTTTTGCTAATGTTATGCAAGGAAATTATGAGCTAATTTATATAAG
TTTACCTATGTTAGTTGTTGCATATATTTTTGCCAATAAAATTACTATTGTAGGTATGGGAAAAGAAGTATGCATTAATC
TTGGTATTTCTTATAATTTTGTCCTTGGTCTTGGCTTATTTATTGTTTCAATTATTACTTCAGTCATTGTTTTAACTGTT
GGAGTTATACCTTTTTTGGGTCTTATTATTCCTAATATTATTTCTATTTATAAGGGTGATAATCTTAAAAGAAATCTTAG
TTATATTGCATTAAGCGGAGCTTTATTTTTGCTTATATGTGATATTTTTGCAAGAATAATTATTTTTCCTTTTGAAATGC
CAATTAGTATAGTAGCAGGAGTTTTTGGATCTTTGATATTTATTTGGATTTTATTAAAGAGAAAAAATGGATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

68.339

100

0.688