Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG43_RS01505 Genome accession   NZ_CP094175
Coordinates   298965..300014 (-) Length   349 a.a.
NCBI ID   WP_245030739.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe063     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 293965..305014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG43_RS01485 (MPG43_01485) rpsL 295054..295461 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG43_RS01490 (MPG43_01490) rpsG 295477..295944 (+) 468 WP_001254353.1 30S ribosomal protein S7 -
  MPG43_RS01495 (MPG43_01495) fusA 295956..298034 (+) 2079 WP_000101840.1 elongation factor G -
  MPG43_RS01500 (MPG43_01500) - 298557..298775 (+) 219 WP_000744171.1 hypothetical protein -
  MPG43_RS01505 (MPG43_01505) waaF 298965..300014 (-) 1050 WP_245030739.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG43_RS01510 (MPG43_01510) hisS 300076..301404 (+) 1329 WP_245030741.1 histidine--tRNA ligase -
  MPG43_RS01515 (MPG43_01515) asd 301391..302431 (+) 1041 WP_245030743.1 aspartate-semialdehyde dehydrogenase -
  MPG43_RS01520 (MPG43_01520) - 302863..303993 (+) 1131 WP_245030746.1 DUF874 family protein -
  MPG43_RS01525 (MPG43_01525) - 304136..304879 (-) 744 WP_180577986.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39493.32 Da        Isoelectric Point: 9.5783

>NTDB_id=577060 MPG43_RS01505 WP_245030739.1 298965..300014(-) (waaF) [Helicobacter pylori strain Hpfe063]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWSASYYAEVSAALLEEGHEIYFFGTKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIECIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=577060 MPG43_RS01505 WP_245030739.1 298965..300014(-) (waaF) [Helicobacter pylori strain Hpfe063]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTTCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
GACGCCCGTTCGCATCGGTTTTGCTCAATTCTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCACAATTTTTAAAAAAAGAATTGGATAGAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGTCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGACTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTGTTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGTGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364