Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MMALV_RS04980 Genome accession   NC_020913
Coordinates   1000659..1002419 (-) Length   586 a.a.
NCBI ID   WP_015504897.1    Uniprot ID   M9SEC1
Organism   Candidatus Methanomethylophilus alvi Mx1201     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 995659..1007419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMALV_RS04960 (MMALV_10110) - 995688..997226 (+) 1539 WP_015504893.1 nitrite/sulfite reductase -
  MMALV_RS04965 (MMALV_10120) - 997263..998948 (+) 1686 WP_015504894.1 glutamate--tRNA ligase -
  MMALV_RS04970 (MMALV_10130) - 999037..999699 (-) 663 WP_022532393.1 metal-dependent transcriptional regulator -
  MMALV_RS04975 (MMALV_10140) - 999820..1000674 (+) 855 WP_015504896.1 DUF1638 domain-containing protein -
  MMALV_RS04980 (MMALV_10150) rcrQ 1000659..1002419 (-) 1761 WP_015504897.1 ABC transporter ATP-binding protein Regulator
  MMALV_RS04985 (MMALV_10160) - 1002416..1004209 (-) 1794 WP_015504898.1 ABC transporter ATP-binding protein -
  MMALV_RS04990 (MMALV_10170) glyA 1004324..1005607 (-) 1284 WP_015504899.1 serine hydroxymethyltransferase -
  MMALV_RS04995 (MMALV_10180) ribB 1005742..1006455 (+) 714 WP_015504900.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
  MMALV_RS05000 (MMALV_10190) - 1006459..1006890 (+) 432 WP_015504901.1 adenylyltransferase/cytidyltransferase family protein -
  MMALV_RS05005 (MMALV_10200) ribC 1006887..1007357 (+) 471 WP_015504902.1 riboflavin synthase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64478.40 Da        Isoelectric Point: 4.8359

>NTDB_id=57703 MMALV_RS04980 WP_015504897.1 1000659..1002419(-) (rcrQ) [Candidatus Methanomethylophilus alvi Mx1201]
MSDGKSGSAFGTTWKRIIVYLGKGRRILWASLILSFMSTILTLIGPGKLTEITDKISEGLGGAMDIDGIAGLVIVLVAIY
TAGLVLSVIENYMVATLSQRTAGRLREDLSSKINRIPLSYFDSTSTGDTLSRVTNDADRVGESTDEGLGTFISEITLLIG
ALVMMVYTNITMAMAAILPTVAGMLMMLLIMRKSQKYFQNQQRNLGDMNGLVEETYSGHTVIKAYNAEGRFGKRFVTVNE
DLCRSAFASQFLSGMMMPLMSFIGNFGYVMVCIVGALLALDGQISIGVIVAFMIYVRLFTQPLSGMAQAFTSMQTAAAAG
ERVFEFLDLPEMVKDETEPFDSSKVKGEVEFRDVHFGYVPGKEIIHGFSLKVKPGQKVAIVGPTGAGKTTMVNLLMRFYE
VNSGDILIDGRSIKDMSREEVHDCFSMVLQDTWLFAGTVRENVVYSKEGVTDEELTDACEAVGLHHYVETLPDKYDTVLD
DVSSISVGQRQQITIARAIVQNAPLLILDEATSSIDTRTERKIQEAMDRMMENRTSFVIAHRLSTIRNADVILMMKDGNV
IEQGSHEELMRAGGAYCELYNSQFDN

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=57703 MMALV_RS04980 WP_015504897.1 1000659..1002419(-) (rcrQ) [Candidatus Methanomethylophilus alvi Mx1201]
ATGAGCGATGGGAAGAGCGGTTCCGCATTCGGGACCACCTGGAAGAGGATCATCGTATATCTCGGGAAGGGCAGGAGGAT
CCTCTGGGCCTCGCTCATCCTGTCGTTCATGAGCACCATACTGACGCTCATCGGTCCCGGAAAGCTGACGGAGATAACCG
ACAAGATCTCCGAGGGCCTGGGCGGTGCGATGGACATCGACGGCATAGCCGGTCTGGTCATCGTTCTCGTCGCCATCTAC
ACCGCAGGTCTGGTCCTGTCCGTCATAGAGAACTACATGGTAGCCACATTGTCCCAGAGGACCGCCGGAAGGCTCCGTGA
GGACCTGTCCTCGAAGATCAACCGCATCCCCCTCAGTTATTTCGACAGCACCAGTACGGGGGATACGCTGAGCCGCGTGA
CCAACGATGCCGACAGGGTCGGGGAGTCCACCGACGAGGGTCTGGGGACGTTCATCAGCGAGATCACCCTGCTCATCGGG
GCCCTGGTCATGATGGTCTACACCAACATCACGATGGCCATGGCCGCCATCCTGCCCACGGTGGCCGGGATGCTGATGAT
GCTGCTGATAATGAGGAAGTCCCAGAAGTATTTCCAGAATCAGCAGAGGAATCTCGGGGACATGAACGGGCTGGTGGAGG
AGACCTATTCCGGCCACACCGTGATCAAGGCGTACAACGCCGAGGGCAGGTTCGGGAAGAGGTTCGTGACCGTCAACGAA
GACCTCTGTCGCAGCGCCTTCGCCTCCCAGTTTCTGTCCGGGATGATGATGCCCCTGATGAGTTTCATCGGCAATTTCGG
ATATGTCATGGTCTGCATAGTGGGTGCGCTCCTGGCGCTCGACGGGCAGATCTCCATCGGGGTCATCGTCGCGTTCATGA
TCTATGTACGCCTGTTCACCCAGCCCCTCTCCGGTATGGCCCAGGCGTTCACCAGCATGCAGACAGCGGCCGCCGCCGGG
GAGAGGGTGTTCGAGTTCCTGGACCTCCCGGAGATGGTGAAGGATGAGACCGAACCCTTCGACTCCTCCAAGGTGAAAGG
GGAGGTCGAGTTCAGAGACGTCCACTTCGGATATGTGCCAGGCAAGGAGATCATCCACGGTTTCTCCCTCAAGGTGAAGC
CTGGGCAGAAGGTGGCCATCGTAGGACCCACGGGTGCGGGGAAGACCACCATGGTCAACCTGCTCATGAGATTCTACGAG
GTGAACAGCGGGGACATACTGATCGACGGAAGGTCCATCAAGGACATGTCCCGCGAGGAGGTCCACGACTGCTTCAGCAT
GGTCCTCCAAGATACCTGGCTCTTCGCAGGCACGGTCCGCGAGAACGTGGTGTATTCCAAGGAAGGGGTCACCGACGAGG
AGCTGACGGACGCCTGCGAGGCGGTCGGACTCCATCACTACGTGGAGACCCTGCCGGACAAGTACGACACCGTACTGGAC
GACGTCTCGTCCATATCGGTAGGACAGAGGCAGCAGATAACGATCGCCAGGGCCATCGTCCAGAACGCTCCCCTGCTGAT
CCTTGACGAGGCCACGAGCTCCATCGATACGCGTACCGAGAGGAAGATCCAGGAGGCCATGGACAGGATGATGGAGAACC
GTACGTCCTTCGTCATCGCCCACCGCCTGTCCACCATCAGGAACGCCGACGTGATCCTGATGATGAAGGACGGGAATGTG
ATCGAGCAGGGCAGCCACGAGGAGCTGATGAGGGCGGGAGGAGCCTACTGCGAACTCTACAACAGTCAGTTCGATAACTG
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(29-303)

ABC transporter (ABC_tran)

(366-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M9SEC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.007

96.587

0.541

Multiple sequence alignment